Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000439A_C02 KMC000439A_c02
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB57817.2| hypothetical protein [Neisseria meningitidis] 37 0.14
ref|NP_376272.1| 553aa long hypothetical protein [Sulfolobus tok... 35 0.54
ref|XP_210191.1| similar to Olfactory receptor 5F1 (Olfactory re... 34 1.6
emb|CAC69944.1| NADH dehydrogenase subunit 4 [Lithobius forficatus] 34 1.6
ref|NP_762518.1| Uncharacterized protein required for cytochrome... 33 3.5
>emb|CAB57817.2| hypothetical protein [Neisseria meningitidis]
Length = 460
Score = 37.4 bits (85), Expect = 0.14
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +2
Query: 233 KRRIERWRLSARDKTKREEYMSLYYRSLKTLFRTNKSRYTPEFL*SMHNLKKTPPIQLYK 412
K++I R+ A + K ++Y Y +LK L NKS + P++L +H ++ ++ K
Sbjct: 137 KKKISNLRIIAYIQLKEKKYFKAY-NNLKLLIELNKSPFYPDYLSIIHAIEN---LEYSK 192
Query: 413 VEDNTKKKTHNY 448
NTKK+ Y
Sbjct: 193 QSQNTKKELTEY 204
>ref|NP_376272.1| 553aa long hypothetical protein [Sulfolobus tokodaii]
gi|15621386|dbj|BAB65381.1| 553aa long hypothetical
protein [Sulfolobus tokodaii]
Length = 553
Score = 35.4 bits (80), Expect = 0.54
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Frame = -2
Query: 297 DMYSSLLVLSLADSLHLSILL---FIFSFVP*S----------EIELGWIYFVLVVGLPR 157
+ Y +LL++S +L + L FI+SFV + +++ + V+G+
Sbjct: 73 NFYETLLLISYYSEYYLVVTLVAFFIYSFVKRNFYDFLIDELKKVKFSFSPLKFVIGISL 132
Query: 156 DDVLHWGCFFFSYIVIEVYVLSIVVGTW----ESVFPSFLCLSIPYLVLEKVY 10
VL+W FF ++ + SI++ + E +F +++PYL+ K Y
Sbjct: 133 SLVLYWVLFFNPLFLLGSLLDSIIISFYGFYYELPLITFNWITLPYLIFPKTY 185
>ref|XP_210191.1| similar to Olfactory receptor 5F1 (Olfactory receptor 11-10)
(OR11-10) [Homo sapiens]
gi|14423782|sp|O95221|O5F1_HUMAN Olfactory receptor 5F1
(Olfactory receptor 11-10) (OR11-10)
Length = 314
Score = 33.9 bits (76), Expect = 1.6
Identities = 23/62 (37%), Positives = 36/62 (57%), Gaps = 3/62 (4%)
Frame = -2
Query: 300 RDMYSSL---LVLSLADSLHLSILLFIFSFVP*SEIELGWIYFVLVVGLPRDDVLHWGCF 130
R Y+SL ++L LAD+L L I+LF+F V + LG + +L++ + D LH +
Sbjct: 3 RKNYTSLTEFVLLGLADTLELQIILFLFFLVIYTLTVLGNLGMILLIRI--DSQLHTPMY 60
Query: 129 FF 124
FF
Sbjct: 61 FF 62
>emb|CAC69944.1| NADH dehydrogenase subunit 4 [Lithobius forficatus]
Length = 444
Score = 33.9 bits (76), Expect = 1.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 195 GWIYFVLVVGLPRDDVLHWGCFFFSYIVIEVYVLSIVVGTWESVFPSFLCLSIPYLVLEK 16
GW YF +GL D +L W + ++ V + +++ V+ + FP+ CL + L L
Sbjct: 40 GWFYFSASLGLAMD-LLSWNLIYLTFWVSSLMMMASVMLFIKRSFPTEFCLVVGLLTLSL 98
Query: 15 V 13
V
Sbjct: 99 V 99
>ref|NP_762518.1| Uncharacterized protein required for cytochrome oxidase assembly
[Vibrio vulnificus CMCP6]
gi|27358559|gb|AAO07508.1|AE016810_11 Uncharacterized
protein required for cytochrome oxidase assembly [Vibrio
vulnificus CMCP6]
Length = 335
Score = 32.7 bits (73), Expect = 3.5
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Frame = -2
Query: 285 SLLVLSLADSLHLSILLFIFSFVP*SEIELGWIYFVLVVGL-----PRDDVLHWGCF--- 130
SLLV++ A ++ + + V + + G++ FVL+ L P + ++ W
Sbjct: 103 SLLVVAQALLGMWTVTMKLMPVVVMAHLLGGFLLFVLLAILYCQLKPTEFMVDWQFVDPR 162
Query: 129 --FFSYIVIEVYVLSIVVGTW-ESVFPSFLCLSIP 34
FFS+ VI V VL I++G W S + + +C +P
Sbjct: 163 LRFFSFFVIAVVVLQILLGGWTSSNYAALMCSELP 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,418,639
Number of Sequences: 1393205
Number of extensions: 11521498
Number of successful extensions: 43874
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 42369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43841
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
