Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000435A_C01 KMC000435A_c01
(727 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181846.1| unknown protein; protein id: At2g43170.1 [Arabi... 51 2e-05
gb|AAK91471.1| At2g43170/F14B2.11 [Arabidopsis thaliana] gi|2509... 48 1e-04
ref|NP_567079.1| epsin-like protein; protein id: At3g59290.1, su... 47 4e-04
pir||T48997 epsin-like protein - Arabidopsis thaliana gi|7801679... 47 4e-04
gb|AAK98696.1|AC069158_8 Putative epsin [Oryza sativa] 44 0.003
>ref|NP_181846.1| unknown protein; protein id: At2g43170.1 [Arabidopsis thaliana]
gi|25408842|pir||H84862 hypothetical protein At2g43170
[imported] - Arabidopsis thaliana
gi|3763926|gb|AAC64306.1| unknown protein [Arabidopsis
thaliana]
Length = 504
Score = 50.8 bits (120), Expect = 2e-05
Identities = 32/58 (55%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Frame = -2
Query: 579 GYGMG-GMGM-------GQGYQVQQPPAGMPPGANMPG-NYNSMTGPGGY-AQQPYGG 436
G GMG GM M GQGY +Q GM P NMPG NYN M G GGY QQ YGG
Sbjct: 444 GMGMGPGMNMNMNMGGYGQGYPMQPQNPGMVPSPNMPGNNYNPMMGQGGYNPQQSYGG 501
>gb|AAK91471.1| At2g43170/F14B2.11 [Arabidopsis thaliana] gi|25090233|gb|AAN72258.1|
At2g43170/F14B2.11 [Arabidopsis thaliana]
Length = 895
Score = 48.1 bits (113), Expect = 1e-04
Identities = 31/58 (53%), Positives = 32/58 (54%), Gaps = 10/58 (17%)
Frame = -2
Query: 579 GYGMG-GMGM-------GQGYQVQQPPAGMPPGANMPGN-YNSMTGPGGY-AQQPYGG 436
G GMG GM M GQ Y +Q GM P NMPGN YN M G GGY QQ YGG
Sbjct: 835 GMGMGPGMNMNMNMGGYGQDYPMQPQNPGMVPSPNMPGNNYNPMMGQGGYNPQQSYGG 892
>ref|NP_567079.1| epsin-like protein; protein id: At3g59290.1, supported by cDNA:
gi_16649016 [Arabidopsis thaliana]
gi|16649017|gb|AAL24360.1| epsin-like protein
[Arabidopsis thaliana]
Length = 1024
Score = 46.6 bits (109), Expect = 4e-04
Identities = 27/50 (54%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -2
Query: 570 MGGMGMGQGYQVQQPPAGMPPGA--NMPGNYNSMTGPGGY---AQQPYGG 436
MGG G G Q QQ PPGA M G YN M G GGY QQPYGG
Sbjct: 972 MGGYGQGYPMQPQQGMGMAPPGAPQGMTGAYNPMMGQGGYNPQQQQPYGG 1021
>pir||T48997 epsin-like protein - Arabidopsis thaliana gi|7801679|emb|CAB91599.1|
epsin-like protein [Arabidopsis thaliana]
Length = 1023
Score = 46.6 bits (109), Expect = 4e-04
Identities = 27/50 (54%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -2
Query: 570 MGGMGMGQGYQVQQPPAGMPPGA--NMPGNYNSMTGPGGY---AQQPYGG 436
MGG G G Q QQ PPGA M G YN M G GGY QQPYGG
Sbjct: 971 MGGYGQGYPMQPQQGMGMAPPGAPQGMTGAYNPMMGQGGYNPQQQQPYGG 1020
>gb|AAK98696.1|AC069158_8 Putative epsin [Oryza sativa]
Length = 945
Score = 43.5 bits (101), Expect = 0.003
Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = -2
Query: 564 GMGMGQGYQVQ-QPPAGMPPGANMPGNYNSM-TGPGGYAQQPYGGYR 430
GMGM QG + +PP GM PG+ YN M TG GG QQPYGGYR
Sbjct: 905 GMGMNQGMGMNMRPPMGMGPGSG----YNPMGTGYGG--QQPYGGYR 945
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 709,851,223
Number of Sequences: 1393205
Number of extensions: 18198769
Number of successful extensions: 66400
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 55744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65407
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
