Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000434A_C02 KMC000434A_c02
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38039.1|AF149917_1 acyl CoA reductase [Simmondsia chinensi... 97 4e-28
ref|NP_567936.1| male sterility 2-like protein; protein id: At4g... 94 7e-28
gb|AAL15288.1| AT4g33790/T16L1_280 [Arabidopsis thaliana] gi|179... 94 7e-28
pir||G85397 male sterility 2-like protein [imported] - Arabidops... 94 7e-28
pir||T04996 male sterility protein 2 homolog T16L1.280 - Arabido... 94 7e-28
>gb|AAD38039.1|AF149917_1 acyl CoA reductase [Simmondsia chinensis]
gi|5020217|gb|AAD38040.1|AF149918_1 acyl CoA reductase
[synthetic construct]
Length = 493
Score = 97.4 bits (241), Expect(2) = 4e-28
Identities = 38/86 (44%), Positives = 63/86 (73%)
Frame = -1
Query: 632 PIKIGKVTILHNMDSFHRYMFIRYVLPAKGLELVNAAFCHYFEQKRRDINRKIKIVMQLV 453
P+ +G+ + + +FH Y+ + ++LP K LE+ N FC +F+ K D+ RK +++++LV
Sbjct: 372 PVHVGRAMVFSSFSTFHLYLTLNFLLPLKVLEIANTIFCQWFKGKYMDLKRKTRLLLRLV 431
Query: 452 EVFKPYCFFNGVFDNMNTEKLQIAAK 375
+++KPY FF G+FD+MNTEKL+IAAK
Sbjct: 432 DIYKPYLFFQGIFDDMNTEKLRIAAK 457
Score = 49.3 bits (116), Expect(2) = 4e-28
Identities = 18/34 (52%), Positives = 26/34 (75%)
Frame = -2
Query: 376 KQGGVEMDLFYFDPKMIDWEDYIMNIHFPALVKY 275
K+ VE D+FYFDP+ I+WEDY + HFP +V++
Sbjct: 457 KESIVEADMFYFDPRAINWEDYFLKTHFPGVVEH 490
>ref|NP_567936.1| male sterility 2-like protein; protein id: At4g33790.1 [Arabidopsis
thaliana]
Length = 510
Score = 94.0 bits (232), Expect(2) = 7e-28
Identities = 41/81 (50%), Positives = 60/81 (73%)
Frame = -1
Query: 629 IKIGKVTILHNMDSFHRYMFIRYVLPAKGLELVNAAFCHYFEQKRRDINRKIKIVMQLVE 450
+K+G + IL +M SFHRYM IRY++ KGLELVN C FE++ + N+KI + +LV+
Sbjct: 391 VKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILCKLFEKEFQYFNKKINFIFRLVD 450
Query: 449 VFKPYCFFNGVFDNMNTEKLQ 387
+++PY FF G+FD+ NTEKL+
Sbjct: 451 LYQPYLFFYGIFDDSNTEKLR 471
Score = 52.0 bits (123), Expect(2) = 7e-28
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2
Query: 367 GVEMDLFYFDPKMIDWEDYIMNIHFPALVKYAF 269
GVE ++FYFDPK++DW+DY +N H L+KY F
Sbjct: 478 GVENEMFYFDPKVLDWDDYFLNTHVIGLLKYVF 510
>gb|AAL15288.1| AT4g33790/T16L1_280 [Arabidopsis thaliana]
gi|17979129|gb|AAL49822.1| putative male sterility 2
protein [Arabidopsis thaliana]
Length = 493
Score = 94.0 bits (232), Expect(2) = 7e-28
Identities = 41/81 (50%), Positives = 60/81 (73%)
Frame = -1
Query: 629 IKIGKVTILHNMDSFHRYMFIRYVLPAKGLELVNAAFCHYFEQKRRDINRKIKIVMQLVE 450
+K+G + IL +M SFHRYM IRY++ KGLELVN C FE++ + N+KI + +LV+
Sbjct: 374 VKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILCKLFEKEFQYFNKKINFIFRLVD 433
Query: 449 VFKPYCFFNGVFDNMNTEKLQ 387
+++PY FF G+FD+ NTEKL+
Sbjct: 434 LYQPYLFFYGIFDDSNTEKLR 454
Score = 52.0 bits (123), Expect(2) = 7e-28
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2
Query: 367 GVEMDLFYFDPKMIDWEDYIMNIHFPALVKYAF 269
GVE ++FYFDPK++DW+DY +N H L+KY F
Sbjct: 461 GVENEMFYFDPKVLDWDDYFLNTHVIGLLKYVF 493
>pir||G85397 male sterility 2-like protein [imported] - Arabidopsis thaliana
gi|7270328|emb|CAB80096.1| male sterility 2-like protein
[Arabidopsis thaliana]
Length = 480
Score = 94.0 bits (232), Expect(2) = 7e-28
Identities = 41/81 (50%), Positives = 60/81 (73%)
Frame = -1
Query: 629 IKIGKVTILHNMDSFHRYMFIRYVLPAKGLELVNAAFCHYFEQKRRDINRKIKIVMQLVE 450
+K+G + IL +M SFHRYM IRY++ KGLELVN C FE++ + N+KI + +LV+
Sbjct: 361 VKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILCKLFEKEFQYFNKKINFIFRLVD 420
Query: 449 VFKPYCFFNGVFDNMNTEKLQ 387
+++PY FF G+FD+ NTEKL+
Sbjct: 421 LYQPYLFFYGIFDDSNTEKLR 441
Score = 52.0 bits (123), Expect(2) = 7e-28
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2
Query: 367 GVEMDLFYFDPKMIDWEDYIMNIHFPALVKYAF 269
GVE ++FYFDPK++DW+DY +N H L+KY F
Sbjct: 448 GVENEMFYFDPKVLDWDDYFLNTHVIGLLKYVF 480
>pir||T04996 male sterility protein 2 homolog T16L1.280 - Arabidopsis thaliana
(fragment) gi|3549681|emb|CAA20592.1| male sterility
2-like protein [Arabidopsis thaliana]
Length = 463
Score = 94.0 bits (232), Expect(2) = 7e-28
Identities = 41/81 (50%), Positives = 60/81 (73%)
Frame = -1
Query: 629 IKIGKVTILHNMDSFHRYMFIRYVLPAKGLELVNAAFCHYFEQKRRDINRKIKIVMQLVE 450
+K+G + IL +M SFHRYM IRY++ KGLELVN C FE++ + N+KI + +LV+
Sbjct: 344 VKVGAIEILSSMRSFHRYMTIRYLIALKGLELVNIILCKLFEKEFQYFNKKINFIFRLVD 403
Query: 449 VFKPYCFFNGVFDNMNTEKLQ 387
+++PY FF G+FD+ NTEKL+
Sbjct: 404 LYQPYLFFYGIFDDSNTEKLR 424
Score = 52.0 bits (123), Expect(2) = 7e-28
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2
Query: 367 GVEMDLFYFDPKMIDWEDYIMNIHFPALVKYAF 269
GVE ++FYFDPK++DW+DY +N H L+KY F
Sbjct: 431 GVENEMFYFDPKVLDWDDYFLNTHVIGLLKYVF 463
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,194,687
Number of Sequences: 1393205
Number of extensions: 9791767
Number of successful extensions: 18041
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18034
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
