Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000433A_C01 KMC000433A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197441.1| putative protein; protein id: At5g19400.1 [Arab... 140 7e-33
ref|NP_174147.1| hypothetical protein; protein id: At1g28260.1 [... 35 0.70
gb|AAO42070.1| unknown protein [Arabidopsis thaliana] 35 0.70
gb|EAA37632.1| GLP_290_18821_16662 [Giardia lamblia ATCC 50803] 33 1.6
gb|AAB84380.1| high-affinity Na+-dependent glutamate transporter... 33 2.0
>ref|NP_197441.1| putative protein; protein id: At5g19400.1 [Arabidopsis thaliana]
Length = 1092
Score = 140 bits (354), Expect = 7e-33
Identities = 69/128 (53%), Positives = 93/128 (71%)
Frame = +1
Query: 139 MIIQTDKMAAPSSRERAQRLYDKNLELENKRRRSAQARVPSDPNAWQQMRENYEAIILED 318
M +Q DK A SS ERA+ +YD+ EL NKR+++ P DPN Q +RE YEAIILE
Sbjct: 1 MTLQMDKTTASSSWERAKSIYDEIAELANKRQKAGN---PPDPNLLQLLREKYEAIILES 57
Query: 319 HAFCDQHNIEYALWQLHYKRIEEFRAYFSAALSSTSSNSSQGGKGPARPDRITKIRLQFK 498
H F +QHNIE LWQLHYKRIE FR + + L+S++S ++Q KGP++ ++I +++LQF+
Sbjct: 58 HTFSEQHNIEIPLWQLHYKRIEYFRLHINRVLASSTSTAAQNVKGPSKAEQIAQLKLQFR 117
Query: 499 TFLSEATG 522
TFLSEATG
Sbjct: 118 TFLSEATG 125
>ref|NP_174147.1| hypothetical protein; protein id: At1g28260.1 [Arabidopsis
thaliana] gi|25518724|pir||G86408 hypothetical protein
F3H9.9 - Arabidopsis thaliana
gi|9795611|gb|AAF98429.1|AC021044_8 Hypothetical protein
[Arabidopsis thaliana]
Length = 880
Score = 34.7 bits (78), Expect = 0.70
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 295 YEAIILEDHAFCDQHNIEYALWQLHYKRIEEFR 393
YE I + + +E+ LW+LHYK I+EFR
Sbjct: 50 YEQIFKSNLQHEELQEVEFCLWKLHYKHIDEFR 82
>gb|AAO42070.1| unknown protein [Arabidopsis thaliana]
Length = 880
Score = 34.7 bits (78), Expect = 0.70
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 295 YEAIILEDHAFCDQHNIEYALWQLHYKRIEEFR 393
YE I + + +E+ LW+LHYK I+EFR
Sbjct: 50 YEQIFKSNLQHEELQEVEFCLWKLHYKHIDEFR 82
>gb|EAA37632.1| GLP_290_18821_16662 [Giardia lamblia ATCC 50803]
Length = 719
Score = 33.5 bits (75), Expect = 1.6
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 411 SSTEICPKLLNPLIMQLPESIFNIVLITESMILKNYCFIVLTHLLPCIRI*WDPCLS*PP 232
S +C K + L+ Q+PE+ +V + I + F +LPC+ PCLS P
Sbjct: 597 SEVGLCLKATDALVKQIPEASVRVVSMPSYTIFNSQPFSEQNAVLPCLTTPGIPCLSVEP 656
>gb|AAB84380.1| high-affinity Na+-dependent glutamate transporter [Trichoplusia ni]
Length = 479
Score = 33.1 bits (74), Expect = 2.0
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +2
Query: 263 IRMHGNRCVRTMKQ*FLRIMLSVISTILNMLSGSCIIRGLRSLGH----ISVLLFLLPAQ 430
+++ NRC FLR L I TI+ +++GS + GLR GH V+ F P +
Sbjct: 3 LQIRRNRCTS-----FLRENLLTIFTIIGVIAGSLLGCGLRFSGHEWSRRDVMYFQYPGE 57
Query: 431 THLREGKALHV 463
LR K+L V
Sbjct: 58 LFLRMLKSLIV 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,241,166
Number of Sequences: 1393205
Number of extensions: 9326592
Number of successful extensions: 27394
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 26345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27386
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
