Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000431A_C01 KMC000431A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181869.1| RRM-containing protein; protein id: At2g43410.1... 67 2e-10
gb|AAM19833.1| At2g43410/T1O24.15 [Arabidopsis thaliana] gi|2776... 66 5e-10
ref|NP_786616.1| prophage Lp4 protein 3, phage-like repressor [L... 34 2.0
gb|AAG17618.1|AF248079_1 phosphoenolpyruvate carboxylase [Flaver... 33 2.6
ref|NP_491573.1| Putative nuclear protein, with 3 coiled coil-4 ... 33 4.4
>ref|NP_181869.1| RRM-containing protein; protein id: At2g43410.1 [Arabidopsis
thaliana] gi|25408866|pir||G84865 hypothetical protein
At2g43410 [imported] - Arabidopsis thaliana
gi|2288985|gb|AAB64314.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1056
Score = 67.4 bits (163), Expect = 2e-10
Identities = 37/62 (59%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Frame = -3
Query: 642 NSDAPNQQLP----VFGAGQGTSEVEADKNQRYQSTLQFAANLLLQIQQQQQTQGGNGPG 475
N + NQ L + G GQGT++ E DKNQRYQSTLQFAANLLLQIQQ+QQ Q P
Sbjct: 993 NLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQFAANLLLQIQQKQQQQSSGTPA 1052
Query: 474 VQ 469
Q
Sbjct: 1053 GQ 1054
>gb|AAM19833.1| At2g43410/T1O24.15 [Arabidopsis thaliana] gi|27764946|gb|AAO23594.1|
At2g43410/T1O24.15 [Arabidopsis thaliana]
Length = 901
Score = 65.9 bits (159), Expect = 5e-10
Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Frame = -3
Query: 642 NSDAPNQQLP----VFGAGQGTSEVEADKNQRYQSTLQFAANLLLQIQQQQQTQGGNGPG 475
N + NQ L + G GQGT++ E DKNQRYQSTLQFAANLLLQIQQ++Q Q P
Sbjct: 838 NLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQFAANLLLQIQQKRQQQSSGTPA 897
Query: 474 VQ 469
Q
Sbjct: 898 GQ 899
>ref|NP_786616.1| prophage Lp4 protein 3, phage-like repressor [Lactobacillus
plantarum WCFS1] gi|28272565|emb|CAD65491.1| prophage
Lp4 protein 3, phage-like repressor [Lactobacillus
plantarum WCFS1]
Length = 229
Score = 33.9 bits (76), Expect = 2.0
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Frame = +3
Query: 165 IVMYMDGTETPIKNRSKASVACRHQIRGMKREDGKLVKRLEKYSLDRNDCGTLIVTKRAC 344
++ Y+ T+ P++ KA + Q MKRE L+ R K+ L + +L R
Sbjct: 80 LITYLGNTK-PVRQFKKALIK---QFSDMKRE---LILRQAKFELGKEFSKSLHEAIRES 132
Query: 345 MQLSEFGSSHENLH-LAFPQNE*KTNDTIHISELRRLKTLLTVELQVHFLLGFAAAAVFA 521
L E G + N++ L + Q ++++ELR+ + + E H+L A AV
Sbjct: 133 PALGEHGHLYVNINKLVYKQAL-----GVNVNELRKARNIPKTEAITHYLSSSEADAV-- 185
Query: 522 REDWQQTAVLTDISGSYQ 575
+ QQ L ++ YQ
Sbjct: 186 KRVKQQIRTLLEMKMDYQ 203
>gb|AAG17618.1|AF248079_1 phosphoenolpyruvate carboxylase [Flaveria trinervia]
Length = 965
Score = 33.5 bits (75), Expect = 2.6
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -1
Query: 599 VKVLQKWRLIRTRDISQHCSLLPIFSCKYSSSSKPKEEM 483
+ V Q + L RTRD + H +L P S +Y+ SKP +E+
Sbjct: 895 LNVCQAYTLKRTRDPNYHVTLRPHISKEYAEPSKPADEL 933
>ref|NP_491573.1| Putative nuclear protein, with 3 coiled coil-4 domains, nematode
specific [Caenorhabditis elegans] gi|7504242|pir||T15190
hypothetical protein F55A12.5 - Caenorhabditis elegans
gi|2088665|gb|AAB54123.1| Hypothetical protein F55A12.5
[Caenorhabditis elegans]
Length = 849
Score = 32.7 bits (73), Expect = 4.4
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -2
Query: 382 KFS*DDPNSESCIHARLVTMSVPQSFLSSEYFSSLFTNLPSSL 254
KFS + E + L +S L SE+ SSLF+NLPS+L
Sbjct: 214 KFSLSNLGDEQTLRLLLWLYLFQKSMLKSEFLSSLFSNLPSTL 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,280,819
Number of Sequences: 1393205
Number of extensions: 11688850
Number of successful extensions: 32940
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 30717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32646
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
