Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000429A_C01 KMC000429A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194893.1| putative protein; protein id: At4g31650.1 [Arab... 33 3.5
>ref|NP_194893.1| putative protein; protein id: At4g31650.1 [Arabidopsis thaliana]
gi|7486323|pir||T05105 hypothetical protein F28M20.160 -
Arabidopsis thaliana gi|3281863|emb|CAA19758.1| putative
protein [Arabidopsis thaliana]
gi|7270068|emb|CAB79883.1| putative protein [Arabidopsis
thaliana]
Length = 493
Score = 32.7 bits (73), Expect = 3.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 530 GWRNLCRINNVLPFDELTFRFTSSDAR 450
GWR+ CR N + P D +TF+ SS+ +
Sbjct: 343 GWRSFCRENGLKPGDSVTFKLESSNTK 369
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,732,952
Number of Sequences: 1393205
Number of extensions: 9834327
Number of successful extensions: 19681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19663
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
