Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000427A_C01 KMC000427A_c01
(725 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197752.1| cation-transporting ATPase; protein id: At5g236... 112 5e-24
ref|NP_596423.1| hypothetical protein. [Schizosaccharomyces pomb... 36 0.48
gb|ZP_00093723.1| hypothetical protein [Novosphingobium aromatic... 36 0.63
gb|AAD45644.1|AF122918_2 unknown [TT virus] 35 1.4
gb|EAA27106.1| predicted protein [Neurospora crassa] 35 1.4
>ref|NP_197752.1| cation-transporting ATPase; protein id: At5g23630.1 [Arabidopsis
thaliana] gi|12229714|sp|Q9LT02|ATX1_ARATH Potential
cation-transporting ATPase gi|8809697|dbj|BAA97238.1|
cation-transporting ATPase [Arabidopsis thaliana]
Length = 1179
Score = 112 bits (280), Expect = 5e-24
Identities = 69/167 (41%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Frame = +2
Query: 107 MSSFHVGGKVVDKVDLYKKKQWPWRLDLWPFAIIYAAWASTILPSLDFVDAMIVFGALVS 286
MSSF VGGKVV+KVDL +KKQ WRLD+WPFAI+Y W +TI+PS+DF DA I G L +
Sbjct: 1 MSSFRVGGKVVEKVDLCRKKQLVWRLDVWPFAILYTVWLTTIVPSIDFSDACIALGGLSA 60
Query: 287 LHILVFLFTSWSVDLQMSRPL*QG*EYSSRLILAR*LRLSSVVLRKLCRSIFGKF---LQ 457
HILV LFT+WSVD + + +++S+ C+ KF +
Sbjct: 61 FHILVLLFTTWSVDFK---------------CFVQFSKVNSIDQADACKVTPAKFSGSKE 105
Query: 458 VVHPHWM-----------WKRLYFDFRKQCLCLFK*QGDFLLTFLPY 565
VV H+ + ++FDFRKQ K G F + LPY
Sbjct: 106 VVPLHFRSQMTDSASSGDMEEIFFDFRKQRFIYSKELGAF--SKLPY 150
Score = 70.1 bits (170), Expect = 3e-11
Identities = 41/113 (36%), Positives = 56/113 (49%)
Frame = +1
Query: 373 QADSCKITPAKFCGSKEVVPLHFRKISAGGSSTLDVEETLL*F*KTMPLSIQMTRGLFAN 552
QAD+CK+TPAKF GSKEVVPLHFR +S+ D+EE F + G F+
Sbjct: 89 QADACKVTPAKFSGSKEVVPLHFRSQMTDSASSGDMEEIFFDF-RKQRFIYSKELGAFSK 147
Query: 553 FLTLPRKHLDIISRVVSMALKLKLLAATEIWGRNVFRLSASPHVIIIERACME 711
++ + + K+ ATE WGRNVF +++ CME
Sbjct: 148 LPYPTKETFGHYLKCTGHGTEAKIATATEKWGRNVFDYPQPTFQKLMKENCME 200
Score = 47.8 bits (112), Expect = 2e-04
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Frame = +3
Query: 330 FKCLAHYSKVKSIH--------PG*FLQDNSG*VLWF*GSCAAPFSENFCRWFIHTGCGR 485
FKC +SKV SI P F L F S +G
Sbjct: 75 FKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTDSAS---------SGDME 125
Query: 486 DFTLILENNAFVYSNDKGTFC*LSYPTTETFGYYLQSSVHGSEAKV 623
+ F+YS + G F L YPT ETFG+YL+ + HG+EAK+
Sbjct: 126 EIFFDFRKQRFIYSKELGAFSKLPYPTKETFGHYLKCTGHGTEAKI 171
>ref|NP_596423.1| hypothetical protein. [Schizosaccharomyces pombe]
gi|7491682|pir||T40478 hypothetical protein SPBC4B4.06 -
fission yeast (Schizosaccharomyces pombe)
gi|3169093|emb|CAA19286.1| hypothetical protein.
[Schizosaccharomyces pombe]
Length = 175
Score = 36.2 bits (82), Expect = 0.48
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -3
Query: 150 STLSTTLPPT*KLDIGESPVPQRVADWVET*TPEDCVFVYYNSLS 16
ST+ TLP + +I E V Q +A+W E P+D +VY+ S+S
Sbjct: 60 STIHRTLPLSVFREIVEDMVKQNLAEWTEKRNPKDVFWVYWRSIS 104
>gb|ZP_00093723.1| hypothetical protein [Novosphingobium aromaticivorans]
Length = 472
Score = 35.8 bits (81), Expect = 0.63
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -1
Query: 266 QSWRRRSRGWEESSMPKRRR*WRKARGLTATAIASSCRDQPCRPPCHRRENLTSENRR 93
+ WRRRS + +P R R + TA+A R +PC PCHR+ L R
Sbjct: 26 REWRRRSVQFRRPRVPPRNGAKAAFRARSRTALA---RARPCAAPCHRQRQLRQPTGR 80
>gb|AAD45644.1|AF122918_2 unknown [TT virus]
Length = 767
Score = 34.7 bits (78), Expect = 1.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 284 KRARRRQSWRRRSRGWEESSMPKRRR*WRKAR 189
+R RRR WRRR R W P+RRR R+ R
Sbjct: 7 RRRRRRPWWRRRWRRWRRRRRPRRRRPRRRYR 38
>gb|EAA27106.1| predicted protein [Neurospora crassa]
Length = 509
Score = 34.7 bits (78), Expect = 1.4
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Frame = -1
Query: 323 RTNW*REKRGCEEKRARRRQSWRRRSRGWEESSMPKRRR*WRKARGLTA-TAIASSCRDQ 147
R W RE+R +EK + ++ R R R +E + P+RR W R +A T +A
Sbjct: 224 RNVWDREEREKKEKEEKANRAKRERGRRHDEEATPQRRE-WETWRDFSATTTLAGGSGSN 282
Query: 146 PCRP 135
P P
Sbjct: 283 PSSP 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,372,070
Number of Sequences: 1393205
Number of extensions: 14406014
Number of successful extensions: 39620
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39262
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
