KMC000424A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000424A_C01 KMC000424A_c01
gatcaaataacttttcaattagggtttaataatattcatatcaagcaagtctgcttgaaa
aaagtaaaaagagagctctcGAAATTCTGCTTCTAAAAGTGCATGCAAAGAGAATTCAAT
ATGACTGCAAACAGTCCAAAATTTAAAGAGATTTAACAATGGATCTTAGCTGCCAAATCC
AAGAGTACATGATCCCAAAAGCACAGTATATAGAGATCAACATAAGGGGCGCGAATGCAA
GCTTATCACCCAAAAGAAGAGGGTGTAAAAATTGGCCCCATATCTCTACAACTACAAGAC
CAACCAGATAAATCATCTCAATCCAGCTAATAACAAAACCTTCATTCTTCACAGGTTCAC
CTGAACTACCTTTAGATCCAAATTGATCAACCTTTTTCTTTGGACGAGCATTTGACGCTC
TTGTCTCAATCCCATCATGAAATTGTGCTGAAAAGCCTGACCACATCAAAATGGAGTGCA
GAAGCAGCAACAGAACTTTGATAGGATACTCTTGTGCCTCGAATAGTAGCGGAAAAAGTG
AATAGCAGGATACTATTGATAGCAAAAAGTAATGCTTTGCATCCTCCAGGGTTTGCGCAG
CAACAATAGCTAGTGGAATTACAAAATGGAGTGATGCCTTCTCATGCACGTGCCACCCAA
AAAGAAAGCCACAGGTATAAGCATAGGCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000424A_C01 KMC000424A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52349.1| similar to Homo sapiens (Human). Probable dolichy... 114 1e-24
ref|NP_181994.1| putative glucosyltransferase; protein id: At2g4... 114 2e-24
emb|CAA12176.1| glucosyltransferase [Homo sapiens] 103 2e-21
ref|XP_214992.1| similar to hypothetical protein MGC2840 similar... 103 3e-21
ref|NP_076984.1| hypothetical protein MGC2840 similar to a putat... 102 7e-21
>gb|AAO52349.1| similar to Homo sapiens (Human). Probable dolichyl pyrophosphate
Glc1Man9GlcNAc2 alpha-1,3- glucosyltransferase (EC
2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP- dolichyl
glucosyltransferase) (HUSSY-2) [Dictyostelium
discoideum]
Length = 291
Score = 114 bits (285), Expect = 1e-24
Identities = 56/175 (32%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
Frame = -2
Query: 667 FLFGWHVHEKASLHFVIPLAIVAAQTLEDAKHYFLLSIVSCYSLFPLLFEAQEYPIKVLL 488
F+FGWHVHEKA + IP+ + + +K YFLLS + YSLFPLLF+ +E P ++L+
Sbjct: 122 FMFGWHVHEKAIIMITIPMGFLCLVNNKFSKLYFLLSTIGHYSLFPLLFQVEEIPTRILI 181
Query: 487 LLLHSILMWSGFSAQFHDGIETRASNARPKKKVDQFGSKGSSGEPVKNEGFVISWIEMIY 308
L+ +++L++ F I + ++N + + +S + + + W E Y
Sbjct: 182 LVTYTLLVYLSF-------ISSSSNNNNNNNNNNNNSNNNNSKQRKCSFSLGLYWFEKFY 234
Query: 307 LVGLVVVEIWGQFLHPLLLG--DKLAFAPLMLISIYCAFGIMYSWIWQLRSIVKS 149
L G++++EI+ F+HP+ L ++ +F LM+ S+Y + GI+Y +++ + I K+
Sbjct: 235 LFGIILLEIFNVFIHPVFLAHIERFSFISLMITSVYTSVGIIYCYLFTFKLIFKN 289
>ref|NP_181994.1| putative glucosyltransferase; protein id: At2g44660.1 [Arabidopsis
thaliana] gi|21263371|sp|O80505|ALG8_ARATH Probable
dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase
(Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
glucosyltransferase) gi|7484991|pir||T01593
glycosyltransferase homolog F16B22.15 - Arabidopsis
thaliana gi|3341686|gb|AAC27468.1| putative
glucosyltransferase [Arabidopsis thaliana]
Length = 383
Score = 114 bits (284), Expect = 2e-24
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = -2
Query: 688 AYAYTCGFLFGWHVHEKASLHFVIPLAIVAAQTLEDAKHYFLLSIVSCYSLFPLLFE 518
AYAYTCGFLFGWHVHEKASLHF IPLAIVA Q+LEDAKHYFL+SIVSCYSL+PLL+E
Sbjct: 311 AYAYTCGFLFGWHVHEKASLHFTIPLAIVAVQSLEDAKHYFLVSIVSCYSLYPLLYE 367
Score = 35.0 bits (79), Expect = 0.98
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 594 KPWRMQSITFCYQ*YPAIHFFRYYSRHKSILSKFCCCFCTPF 469
K + + SI CY YP ++ +S S+FCCC+C P+
Sbjct: 348 KHYFLVSIVSCYSLYPLLY------EPRSTRSRFCCCYCIPW 383
>emb|CAA12176.1| glucosyltransferase [Homo sapiens]
Length = 532
Score = 103 bits (257), Expect = 2e-21
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 1/164 (0%)
Frame = -2
Query: 667 FLFGWHVHEKASLHFVIPLAIVAAQTLEDAKHYFLLSIVSCYSLFPLLFEAQEYPIKVLL 488
F+FGWHVHEKA L ++P+++++ DA + +L+ YSLFPLLF A E PIK+LL
Sbjct: 380 FMFGWHVHEKAILLAILPMSLLSVGKAGDASIFLILTTTGHYSLFPLLFTAPELPIKILL 439
Query: 487 LLLHSILMWSGFSAQFHDGIETRASNARPKKKVDQFGSKGSSGEPVKNEGFVISWIEMIY 308
+LL +I S F + E + +W+E Y
Sbjct: 440 MLLFTIYSISSLKTLF------------------------------RKEKPLFNWMETFY 469
Query: 307 LVGLVVVEIWGQFLHPLLLGD-KLAFAPLMLISIYCAFGIMYSW 179
L+GL +E+ +F++P K F PL+L S+YCA GI Y+W
Sbjct: 470 LLGLGPLEVCCEFVYPFTSWKVKYPFIPLLLTSVYCAVGITYAW 513
>ref|XP_214992.1| similar to hypothetical protein MGC2840 similar to a putative
glucosyltransferase [Homo sapiens] [Rattus norvegicus]
Length = 152
Score = 103 bits (256), Expect = 3e-21
Identities = 59/171 (34%), Positives = 88/171 (50%), Gaps = 1/171 (0%)
Frame = -2
Query: 664 LFGWHVHEKASLHFVIPLAIVAAQTLEDAKHYFLLSIVSCYSLFPLLFEAQEYPIKVLLL 485
+FGWHVHEKA L ++P++++A + DA + +L+ YSLFPLLF A E PIK+LL+
Sbjct: 1 MFGWHVHEKAILLAILPMSLLAVEKAGDATIFLILTTTGHYSLFPLLFTAPELPIKILLM 60
Query: 484 LLHSILMWSGFSAQFHDGIETRASNARPKKKVDQFGSKGSSGEPVKNEGFVISWIEMIYL 305
L ++ S F + E + +W+E +YL
Sbjct: 61 SLFTVYSISSLRTLF------------------------------RKEKPLFNWMETLYL 90
Query: 304 VGLVVVEIWGQFLHPLLLGD-KLAFAPLMLISIYCAFGIMYSWIWQLRSIV 155
+GL +E+ +FL P K F PL+L S+YCA GI Y+WI S++
Sbjct: 91 LGLGPLEVCCEFLFPFTSWKLKYPFIPLLLTSVYCAVGITYAWIRLYASVL 141
>ref|NP_076984.1| hypothetical protein MGC2840 similar to a putative
glucosyltransferase [Homo sapiens]
gi|21263375|sp|Q9BVK2|ALG8_HUMAN Probable dolichyl
pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase
(Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
glucosyltransferase) (HUSSY-2)
gi|12654595|gb|AAH01133.1|AAH01133 Unknown (protein for
MGC:2840) [Homo sapiens]
Length = 526
Score = 102 bits (253), Expect = 7e-21
Identities = 57/164 (34%), Positives = 84/164 (50%), Gaps = 1/164 (0%)
Frame = -2
Query: 667 FLFGWHVHEKASLHFVIPLAIVAAQTLEDAKHYFLLSIVSCYSLFPLLFEAQEYPIKVLL 488
F+FGWHVHEKA L ++P+++++ DA + +L+ YSLFPLLF A E PIK+LL
Sbjct: 374 FMFGWHVHEKAILLAILPMSLLSVGKAGDASIFLILTTTGHYSLFPLLFTAPELPIKILL 433
Query: 487 LLLHSILMWSGFSAQFHDGIETRASNARPKKKVDQFGSKGSSGEPVKNEGFVISWIEMIY 308
+LL +I S F + E + +W+E Y
Sbjct: 434 MLLFTIYSISSLKTLF------------------------------RKEKPLFNWMETFY 463
Query: 307 LVGLVVVEIWGQFLHPLLLGD-KLAFAPLMLISIYCAFGIMYSW 179
L+GL +E+ +F+ P K F PL+L S+YCA G+ Y+W
Sbjct: 464 LLGLGPLEVCCEFVFPFTSWKVKYPFIPLLLTSVYCAVGVTYAW 507
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,492,528
Number of Sequences: 1393205
Number of extensions: 11701203
Number of successful extensions: 30854
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 29904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30832
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENLf016b10 |
BP063188 |
1 |
458 |
2 |
MPD020a11_f |
AV771362 |
93 |
589 |
3 |
MF069a01_f |
BP031945 |
128 |
531 |
4 |
MF090h11_f |
BP033046 |
150 |
691 |
|
Lotus japonicus
Kazusa DNA Research Institute