Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000423A_C02 KMC000423A_c02
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568289.2| GTP-binding protein typA (tyrosine phosphorylat... 106 2e-22
gb|AAL24425.1| GTP-binding protein typA (tyrosine phosphorylated... 106 2e-22
dbj|BAB08691.1| GTP-binding protein typA (tyrosine phosphorylate... 106 2e-22
gb|ZP_00070603.1| hypothetical protein [Oenococcus oeni MCW] 55 6e-07
ref|NP_439024.1| GTP-binding protein [Haemophilus influenzae Rd]... 54 1e-06
>ref|NP_568289.2| GTP-binding protein typA (tyrosine phosphorylated protein A);
protein id: At5g13650.1 [Arabidopsis thaliana]
Length = 675
Score = 106 bits (265), Expect = 2e-22
Identities = 51/59 (86%), Positives = 55/59 (92%)
Frame = -1
Query: 575 RKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKGR 399
+KKAATNIRSNK+ TVILDTPL YSLDDCIEYI+EDELVEVTP SIRMCKN K+AKKGR
Sbjct: 616 KKKAATNIRSNKDVTVILDTPLTYSLDDCIEYIEEDELVEVTPSSIRMCKNQKMAKKGR 674
>gb|AAL24425.1| GTP-binding protein typA (tyrosine phosphorylated protein A)
[Arabidopsis thaliana] gi|24899717|gb|AAN65073.1|
GTP-binding protein typA (tyrosine phosphorylated
protein A) [Arabidopsis thaliana]
Length = 392
Score = 106 bits (265), Expect = 2e-22
Identities = 51/59 (86%), Positives = 55/59 (92%)
Frame = -1
Query: 575 RKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKGR 399
+KKAATNIRSNK+ TVILDTPL YSLDDCIEYI+EDELVEVTP SIRMCKN K+AKKGR
Sbjct: 333 KKKAATNIRSNKDVTVILDTPLTYSLDDCIEYIEEDELVEVTPSSIRMCKNQKMAKKGR 391
>dbj|BAB08691.1| GTP-binding protein typA (tyrosine phosphorylated protein A)
[Arabidopsis thaliana]
Length = 609
Score = 106 bits (265), Expect = 2e-22
Identities = 51/59 (86%), Positives = 55/59 (92%)
Frame = -1
Query: 575 RKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKGR 399
+KKAATNIRSNK+ TVILDTPL YSLDDCIEYI+EDELVEVTP SIRMCKN K+AKKGR
Sbjct: 550 KKKAATNIRSNKDVTVILDTPLTYSLDDCIEYIEEDELVEVTPSSIRMCKNQKMAKKGR 608
>gb|ZP_00070603.1| hypothetical protein [Oenococcus oeni MCW]
Length = 611
Score = 55.1 bits (131), Expect = 6e-07
Identities = 26/51 (50%), Positives = 39/51 (75%), Gaps = 1/51 (1%)
Frame = -1
Query: 575 RKKAATNIRS-NKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCK 426
R KA +N+RS NK+QT I+ TP +L++ IE++ +DELVEVTP++ R+ K
Sbjct: 544 RMKAQSNVRSSNKDQTAIIKTPTHLTLEESIEFLNDDELVEVTPENTRLRK 594
>ref|NP_439024.1| GTP-binding protein [Haemophilus influenzae Rd]
gi|1176325|sp|P44910|TYPA_HAEIN GTP-binding protein
typA/bipA homolog gi|1074543|pir||G64160 GTP-binding
protein HI0864 - Haemophilus influenzae (strain Rd KW20)
gi|1573881|gb|AAC22523.1| GTP-binding protein
[Haemophilus influenzae Rd]
Length = 616
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/49 (53%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = -1
Query: 569 KAATNIR-SNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCK 426
K TN+R S K+ ++L TP+ +SL+ IE+I +DELVEVTP+SIR+ K
Sbjct: 547 KKLTNMRASGKDDAIVLTTPVKFSLEQAIEFIDDDELVEVTPESIRIRK 595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,989,112
Number of Sequences: 1393205
Number of extensions: 9583736
Number of successful extensions: 21020
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 20494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21009
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
