Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000420A_C01 KMC000420A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179803.1| unknown protein; protein id: At2g22125.1 [Arabi... 170 9e-42
ref|NP_177870.1| unknown protein; protein id: At1g77460.1 [Arabi... 104 8e-22
dbj|BAC42703.1| unknown protein [Arabidopsis thaliana] 104 8e-22
ref|NP_175078.1| hypothetical protein; protein id: At1g44120.1 [... 81 1e-14
dbj|BAB62594.1| P0454H12.27 [Oryza sativa (japonica cultivar-gro... 48 9e-05
>ref|NP_179803.1| unknown protein; protein id: At2g22125.1 [Arabidopsis thaliana]
gi|20198149|gb|AAM15432.1| unknown protein [Arabidopsis
thaliana] gi|20198216|gb|AAM15466.1| unknown protein
[Arabidopsis thaliana]
Length = 109
Score = 170 bits (431), Expect = 9e-42
Identities = 82/87 (94%), Positives = 85/87 (97%)
Frame = -3
Query: 551 TKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV 372
TKV+STGPNP+WDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV
Sbjct: 24 TKVISTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV 83
Query: 371 AGEYTLSPESKSGPSRNLEIEFQWSNK 291
AGEY+L PESKSGP RNLEIEFQWSNK
Sbjct: 84 AGEYSLLPESKSGP-RNLEIEFQWSNK 109
>ref|NP_177870.1| unknown protein; protein id: At1g77460.1 [Arabidopsis thaliana]
gi|25406506|pir||H96803 unknown protein T5M16.5
[imported] - Arabidopsis thaliana
gi|12323397|gb|AAG51678.1|AC010704_22 unknown protein;
15069-22101 [Arabidopsis thaliana]
Length = 2110
Score = 104 bits (259), Expect = 8e-22
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = -3
Query: 551 TKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV 372
TKVVS P+W E F+W+F+ PPKGQKLHI CK+KS GK++ G+VTIQID+VV G
Sbjct: 2017 TKVVSNSTTPEWKEGFTWAFDVPPKGQKLHIICKSKSTFGKTTLGRVTIQIDKVVTEGEY 2076
Query: 371 AGEYTLSPE-SKSGPSRNLEIEFQWSNK 291
+G +L+ E SK SR+L+IE WSN+
Sbjct: 2077 SGSLSLNHENSKDASSRSLDIEIAWSNR 2104
>dbj|BAC42703.1| unknown protein [Arabidopsis thaliana]
Length = 434
Score = 104 bits (259), Expect = 8e-22
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = -3
Query: 551 TKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV 372
TKVVS P+W E F+W+F+ PPKGQKLHI CK+KS GK++ G+VTIQID+VV G
Sbjct: 341 TKVVSNSTTPEWKEGFTWAFDVPPKGQKLHIICKSKSTFGKTTLGRVTIQIDKVVTEGEY 400
Query: 371 AGEYTLSPE-SKSGPSRNLEIEFQWSNK 291
+G +L+ E SK SR+L+IE WSN+
Sbjct: 401 SGSLSLNHENSKDASSRSLDIEIAWSNR 428
>ref|NP_175078.1| hypothetical protein; protein id: At1g44120.1 [Arabidopsis thaliana]
gi|25405158|pir||E96505 hypothetical protein T7O23.25
[imported] - Arabidopsis thaliana
gi|12320824|gb|AAG50555.1|AC074228_10 hypothetical
protein [Arabidopsis thaliana]
Length = 2114
Score = 80.9 bits (198), Expect = 1e-14
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = -3
Query: 551 TKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV 372
TKVV +P W ESF+W F +PP+GQ L I CK+ + + GKV I ID+V+ G+
Sbjct: 2024 TKVVKRSSSPVWKESFTWDFAAPPRGQFLEIVCKSNNIFRNKNLGKVRIPIDKVLSEGSY 2083
Query: 371 AGEYTLSPESKSGPS--RNLEIEFQWSNK 291
+G + L+ ESK S R+LEIE WSN+
Sbjct: 2084 SGIFKLNDESKKDNSSDRSLEIEIVWSNQ 2112
>dbj|BAB62594.1| P0454H12.27 [Oryza sativa (japonica cultivar-group)]
gi|21104782|dbj|BAB93369.1| OJ1529_G03.5 [Oryza sativa
(japonica cultivar-group)]
Length = 476
Score = 47.8 bits (112), Expect = 9e-05
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = -3
Query: 551 TKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSK---MGKSSFGKVTIQIDRVVML 381
TKVV NP W E F + E P KLH+ K K S G + I + V++
Sbjct: 391 TKVVKENRNPRWKEEFEFECEETPANDKLHVEVLGTKKALIRNKESLGHIDISLADVIIN 450
Query: 380 GAVAGEYTLSPESKSGPSRNLEIEFQWSN 294
+ Y L SK G ++IEFQW +
Sbjct: 451 KRIIEMYDLI-NSKRG---QIQIEFQWKS 475
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,489,834
Number of Sequences: 1393205
Number of extensions: 10164280
Number of successful extensions: 21234
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 20714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21226
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
