Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000419A_C01 KMC000419A_c01
(991 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02713.1| gene_id:MEB5.12~unknown protein [Arabidopsis tha... 45 0.002
ref|NP_566591.1| expressed protein; protein id: At3g17900.1, sup... 45 0.002
ref|NP_739643.1| NADH dehydrogenase subunit 5 [Carapus bermudens... 34 3.0
ref|NP_461424.1| dihydrodipicolinate synthase [Salmonella typhim... 34 3.0
ref|NP_457023.1| dihydrodipicolinate synthase [Salmonella enteri... 34 3.0
>dbj|BAB02713.1| gene_id:MEB5.12~unknown protein [Arabidopsis thaliana]
Length = 833
Score = 44.7 bits (104), Expect = 0.002
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3
Query: 989 IKLELLPLTYGIITLDSLQIDVKEKGK 909
IKLELLPLT GIITLD+LQI KEKG+
Sbjct: 786 IKLELLPLTDGIITLDTLQIHAKEKGR 812
>ref|NP_566591.1| expressed protein; protein id: At3g17900.1, supported by cDNA:
gi_13605520 [Arabidopsis thaliana]
gi|13605521|gb|AAK32754.1|AF361586_1 AT3g17900/MEB5_12
[Arabidopsis thaliana] gi|23506057|gb|AAN28888.1|
At3g17900/MEB5_12 [Arabidopsis thaliana]
Length = 838
Score = 44.7 bits (104), Expect = 0.002
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3
Query: 989 IKLELLPLTYGIITLDSLQIDVKEKGK 909
IKLELLPLT GIITLD+LQI KEKG+
Sbjct: 791 IKLELLPLTDGIITLDTLQIHAKEKGR 817
>ref|NP_739643.1| NADH dehydrogenase subunit 5 [Carapus bermudensis]
gi|25005506|dbj|BAC23174.1| NADH dehydrogenase subunit 5
[Carapus bermudensis]
Length = 622
Score = 34.3 bits (77), Expect = 3.0
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = -3
Query: 182 MAQNGQFASLDSKISLVTYCQVSMAHKVTTSYTWFRIMKLTLFICVKHSFIFALYIPRA 6
MA N F S + +T A VTTS++W I TL + K F A +IP A
Sbjct: 50 MAVNAIFMSFLISLLPLTLLLFQGADNVTTSWSWLSISSFTLSLSFKFDFYSATFIPVA 108
>ref|NP_461424.1| dihydrodipicolinate synthase [Salmonella typhimurium LT2]
gi|24211624|sp|Q8ZN71|DAPA_SALTY Dihydrodipicolinate
synthase (DHDPS) gi|16421031|gb|AAL21383.1|
dihydrodipicolinate synthase [Salmonella typhimurium
LT2]
Length = 292
Score = 34.3 bits (77), Expect = 3.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 272 NQVYVHPTQVSIPWKCRAVGFIFREHSGIKVIPVTPGGESVRTGADGH 415
N+++V P + + W C+A+G + + + + P+T G + A H
Sbjct: 241 NKLFVEPNPIPVKWACKALGLVATDTLRLPMTPITDHGRDIVKAALQH 288
>ref|NP_457023.1| dihydrodipicolinate synthase [Salmonella enterica subsp. enterica
serovar Typhi] gi|29140897|ref|NP_804239.1|
dihydrodipicolinate synthase [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
gi|24211622|sp|Q8Z4R8|DAPA_SALTI Dihydrodipicolinate
synthase (DHDPS) gi|25291205|pir||AE0817
dihydrodipicolinate synthase [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503706|emb|CAD02689.1| dihydrodipicolinate synthase
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29136522|gb|AAO68088.1| dihydrodipicolinate synthase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 292
Score = 34.3 bits (77), Expect = 3.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 272 NQVYVHPTQVSIPWKCRAVGFIFREHSGIKVIPVTPGGESVRTGADGH 415
N+++V P + + W C+A+G + + + + P+T G + A H
Sbjct: 241 NKLFVEPNPIPVKWACKALGLVATDTLRLPMTPITDHGRDIVKAALQH 288
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 810,129,027
Number of Sequences: 1393205
Number of extensions: 17273548
Number of successful extensions: 32429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32421
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 56566024535
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
