Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000417A_C01 KMC000417A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC53936.1| chromomethylase-like protein [Nicotiana tabacum] 208 5e-53
gb|AAM28227.1| DNA methyltransferase 105 [Zea mays] 204 5e-52
gb|AAK15805.1| chromomethylase [Zea mays] 203 1e-51
gb|AAN60988.1| Putative DNA cytosine methyltransferase MET2a [Or... 201 4e-51
gb|AAK11516.1|AF243043_1 DNA cytosine methyltransferase MET2a [Z... 201 6e-51
>dbj|BAC53936.1| chromomethylase-like protein [Nicotiana tabacum]
Length = 741
Score = 208 bits (529), Expect = 5e-53
Identities = 99/143 (69%), Positives = 118/143 (82%)
Frame = -2
Query: 590 EWDPDVQREYLESKKPLVPNYAMSFVGGKSSKPFARLWWDETVPTVVTRAEPHNQAIIHP 411
E DPDV+R + S KPLVP+YA++FV G S+KPF RLWWDE VPTVVTRAEPHNQ I+HP
Sbjct: 598 ELDPDVERVKVASGKPLVPDYAITFVRGTSTKPFGRLWWDEIVPTVVTRAEPHNQVILHP 657
Query: 410 EQDRVLSIRENARLQGFPDYYKLCGPVKARYIQVGNAVAVPVARALGYTLGLAFQGVAGD 231
EQDRVL+IRENARLQGFPDYYKL GP+K RY+QVGNAVAVPVAR LGY+L LA +G++ +
Sbjct: 658 EQDRVLTIRENARLQGFPDYYKLTGPIKERYMQVGNAVAVPVARVLGYSLALALEGLSEE 717
Query: 230 GPLLNLPGGFPMNFPSASSEENV 162
PLL+LP FP S+EE++
Sbjct: 718 KPLLSLPPNFPCLEELGSNEESI 740
>gb|AAM28227.1| DNA methyltransferase 105 [Zea mays]
Length = 915
Score = 204 bits (520), Expect = 5e-52
Identities = 98/131 (74%), Positives = 109/131 (82%), Gaps = 1/131 (0%)
Frame = -2
Query: 590 EWDPDVQREYLESKKPLVPNYAMSFVGGKSSKPFARLWWDETVPTVVTRAEPHNQAIIHP 411
EWDP+V+R YL S KPLVP+YAMSF+ GKS KPF RLWWDETVPTVVTRAEPHNQ I+HP
Sbjct: 760 EWDPEVERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQVILHP 819
Query: 410 EQDRVLSIRENARLQGFPDYYKLCGPVKARYIQVGNAVAVPVARALGYTLGLAFQGVA-G 234
Q RVL+IRENARLQGFPDYY+L GP+K +YIQVGNAVAVPVARALGY LG A+ G + G
Sbjct: 820 TQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGESDG 879
Query: 233 DGPLLNLPGGF 201
PL LP F
Sbjct: 880 SQPLYQLPASF 890
>gb|AAK15805.1| chromomethylase [Zea mays]
Length = 915
Score = 203 bits (517), Expect = 1e-51
Identities = 97/131 (74%), Positives = 109/131 (83%), Gaps = 1/131 (0%)
Frame = -2
Query: 590 EWDPDVQREYLESKKPLVPNYAMSFVGGKSSKPFARLWWDETVPTVVTRAEPHNQAIIHP 411
EWDP+V+R YL S KPLVP+YAMSF+ GKS KPF RLWWD+TVPTVVTRAEPHNQ I+HP
Sbjct: 760 EWDPEVERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDQTVPTVVTRAEPHNQVILHP 819
Query: 410 EQDRVLSIRENARLQGFPDYYKLCGPVKARYIQVGNAVAVPVARALGYTLGLAFQGVA-G 234
Q RVL+IRENARLQGFPDYY+L GP+K +YIQVGNAVAVPVARALGY LG A+ G + G
Sbjct: 820 TQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGESDG 879
Query: 233 DGPLLNLPGGF 201
PL LP F
Sbjct: 880 SQPLYQLPASF 890
>gb|AAN60988.1| Putative DNA cytosine methyltransferase MET2a [Oryza sativa (japonica
cultivar-group)]
Length = 1761
Score = 201 bits (512), Expect = 4e-51
Identities = 96/129 (74%), Positives = 111/129 (85%), Gaps = 1/129 (0%)
Frame = -2
Query: 584 DPDVQREYLESKKPLVPNYAMSFVGGKSSKPFARLWWDETVPTVVTRAEPHNQAIIHPEQ 405
DP++ RE L S KPLVP+YA+SFV GKS+KPF RLWWDETVPTVVTRAEPHNQ I+HP Q
Sbjct: 877 DPNISRERLSSGKPLVPDYAISFVKGKSTKPFGRLWWDETVPTVVTRAEPHNQIILHPSQ 936
Query: 404 DRVLSIRENARLQGFPDYYKLCGPVKARYIQVGNAVAVPVARALGYTLGLAFQGVA-GDG 228
DRVL+IRENARLQGFPDYY+L GP+K +YIQVGNAVA+PVARALGY LGLA++G + GD
Sbjct: 937 DRVLTIRENARLQGFPDYYRLIGPLKEKYIQVGNAVAIPVARALGYALGLAYRGESDGDR 996
Query: 227 PLLNLPGGF 201
+L LP F
Sbjct: 997 AVLKLPESF 1005
>gb|AAK11516.1|AF243043_1 DNA cytosine methyltransferase MET2a [Zea mays]
Length = 912
Score = 201 bits (511), Expect = 6e-51
Identities = 97/131 (74%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Frame = -2
Query: 590 EWDPDVQREYLESKKPLVPNYAMSFVGGKSSKPFARLWWDETVPTVVTRAEPHNQAIIHP 411
EWDP+++R L S KPLVP+YAMSF+ GKS KPF RLWWDETVPTVVTRAEPHNQ IIHP
Sbjct: 756 EWDPEIERVKLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQVIIHP 815
Query: 410 EQDRVLSIRENARLQGFPDYYKLCGPVKARYIQVGNAVAVPVARALGYTLGLAFQGVA-G 234
Q RVL+IRENARLQGFPDYY+L GP+K +YIQVGNAVAVPVARALGY LG A+ G + G
Sbjct: 816 TQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGESEG 875
Query: 233 DGPLLNLPGGF 201
PL LP F
Sbjct: 876 SDPLYQLPPSF 886
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,378,352
Number of Sequences: 1393205
Number of extensions: 11692583
Number of successful extensions: 28496
Number of sequences better than 10.0: 227
Number of HSP's better than 10.0 without gapping: 27548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28449
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
