Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000413A_C02 KMC000413A_c02
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193943.1| putative protein; protein id: At4g22120.1 [Arab... 112 5e-24
gb|AAL07154.1| unknown protein [Arabidopsis thaliana] 110 3e-23
ref|NP_192343.1| unknown protein; protein id: At4g04340.1, suppo... 110 3e-23
dbj|BAB89160.1| OJ1029_F04.25 [Oryza sativa (japonica cultivar-g... 98 2e-19
pir||H96649 protein F24O1.4 [imported] - Arabidopsis thaliana gi... 92 1e-17
>ref|NP_193943.1| putative protein; protein id: At4g22120.1 [Arabidopsis thaliana]
gi|11357340|pir||T49119 hypothetical protein AT4g22120 -
Arabidopsis thaliana gi|2961357|emb|CAA18115.1| putative
protein [Arabidopsis thaliana]
gi|7269057|emb|CAB79167.1| putative protein [Arabidopsis
thaliana]
Length = 697
Score = 112 bits (281), Expect = 5e-24
Identities = 58/83 (69%), Positives = 66/83 (78%)
Frame = -1
Query: 805 EAMMKDTLERATEPNLNLKGYLQNAYVHPVFKASMEDEEDEEEDDVMSHKWDSESVTVPT 626
EAMMKDTLE A EPNLNLKGYLQNAYVHPVFK DE+D + DD + K++ E++ VPT
Sbjct: 613 EAMMKDTLETAREPNLNLKGYLQNAYVHPVFKG---DEDDYDIDDKLG-KFEDEAIIVPT 668
Query: 625 KRQSRRNTPLPSKVSGASSPSLP 557
KRQSRRNTP PS +SG SPSLP
Sbjct: 669 KRQSRRNTPAPSIISGDDSPSLP 691
>gb|AAL07154.1| unknown protein [Arabidopsis thaliana]
Length = 772
Score = 110 bits (274), Expect = 3e-23
Identities = 55/82 (67%), Positives = 64/82 (77%)
Frame = -1
Query: 805 EAMMKDTLERATEPNLNLKGYLQNAYVHPVFKASMEDEEDEEEDDVMSHKWDSESVTVPT 626
EAMMKDTLERA EPNLNLKGYLQ+AY+HPVFK D ++D M K ++E + VPT
Sbjct: 688 EAMMKDTLERAREPNLNLKGYLQDAYIHPVFKGG-----DNDDDGDMIGKLENEVIIVPT 742
Query: 625 KRQSRRNTPLPSKVSGASSPSL 560
KRQSRRNTP PS++SG SSPSL
Sbjct: 743 KRQSRRNTPAPSRISGESSPSL 764
>ref|NP_192343.1| unknown protein; protein id: At4g04340.1, supported by cDNA:
gi_15810532, supported by cDNA: gi_20260619 [Arabidopsis
thaliana] gi|25407261|pir||H85054 hypothetical protein
AT4g04340 [imported] - Arabidopsis thaliana
gi|4982479|gb|AAD36947.1|AF069441_7 predicted protein of
unknown function [Arabidopsis thaliana]
gi|7267191|emb|CAB77902.1| predicted protein of unknown
function [Arabidopsis thaliana]
gi|20260620|gb|AAM13208.1| unknown protein [Arabidopsis
thaliana]
Length = 772
Score = 110 bits (274), Expect = 3e-23
Identities = 55/82 (67%), Positives = 64/82 (77%)
Frame = -1
Query: 805 EAMMKDTLERATEPNLNLKGYLQNAYVHPVFKASMEDEEDEEEDDVMSHKWDSESVTVPT 626
EAMMKDTLERA EPNLNLKGYLQ+AY+HPVFK D ++D M K ++E + VPT
Sbjct: 688 EAMMKDTLERAREPNLNLKGYLQDAYIHPVFKGG-----DNDDDGDMIGKLENEVIIVPT 742
Query: 625 KRQSRRNTPLPSKVSGASSPSL 560
KRQSRRNTP PS++SG SSPSL
Sbjct: 743 KRQSRRNTPAPSRISGESSPSL 764
>dbj|BAB89160.1| OJ1029_F04.25 [Oryza sativa (japonica cultivar-group)]
Length = 646
Score = 97.8 bits (242), Expect = 2e-19
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = -1
Query: 805 EAMMKDTLERATEPNLNLKGYLQNAYVHPVFKASMEDEEDEEEDDVMSHKWDSESVTVPT 626
+AM KDTLERA EP +LKGYL NAY+HPVFK DE+DE+ +S + ++E V V T
Sbjct: 561 DAMRKDTLERAREPGFDLKGYLMNAYIHPVFKG---DEDDEKFS--ISDEPEAEQVLVAT 615
Query: 625 KRQSRRNTPLPSKVSGASSPSLPDI 551
KRQSRRNTP+PSK +G+ SPSL +I
Sbjct: 616 KRQSRRNTPVPSKYNGSESPSLAEI 640
>pir||H96649 protein F24O1.4 [imported] - Arabidopsis thaliana
gi|7940292|gb|AAF70851.1|AC003113_18 F24O1.4
[Arabidopsis thaliana]
Length = 778
Score = 91.7 bits (226), Expect = 1e-17
Identities = 51/84 (60%), Positives = 58/84 (68%), Gaps = 1/84 (1%)
Frame = -1
Query: 805 EAMMKDTLERATEPNLNLKGYLQNAYVHPVFKASMEDEEDEEEDDVMSHKWDSESVTVPT 626
EAM+KDTLERA EPNLNLKG+LQNAYVHPVFK DEED +E+ ++ D + V V T
Sbjct: 686 EAMIKDTLERAREPNLNLKGFLQNAYVHPVFK----DEEDSDEEGLIEDSDDEDCVVVQT 741
Query: 625 KRQ-SRRNTPLPSKVSGASSPSLP 557
KRQ SRR T S S SS S P
Sbjct: 742 KRQRSRRTTVASSNASRGSSQSTP 765
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 672,081,812
Number of Sequences: 1393205
Number of extensions: 15685688
Number of successful extensions: 76445
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 50414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70382
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
