Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000410A_C01 KMC000410A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00757 probable ubiquitin carboxyl terminal hydrolase [impo... 147 5e-35
ref|NP_565944.1| ubiquitin-specific protease 5 (UBP5), putative;... 147 5e-35
gb|AAD03433.1| contains similarity to ubiquitin carboxyl-termina... 49 2e-05
ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arab... 49 2e-05
gb|AAD03434.1| contains similarity to ubiquitin carboxyl-termina... 48 7e-05
>pir||T00757 probable ubiquitin carboxyl terminal hydrolase [imported] -
Arabidopsis thaliana
Length = 914
Score = 147 bits (372), Expect = 5e-35
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Frame = +3
Query: 135 MTEVSMCSSSTS-ELSPDEERIMIRDIALASQANSKEGDTFFSITQRWWQHGIEYVNQDH 311
M EVSM SSS+S +LSP+EER+ IRDIA+A++ANSKEGDTF+ ITQRWWQ IEYVNQD
Sbjct: 1 MAEVSMGSSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQ 60
Query: 312 TNTSYDGSSFLEQCDMAYANVSKKASGIDNSDLIHDVAPEDSSTGIEIHDTL*EGREYVL 491
+ DGSS E CD ++ KK S IDNSDLI+D + ED S EI +TL EGR+YVL
Sbjct: 61 PCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVL 120
Query: 492 LPQ 500
LPQ
Sbjct: 121 LPQ 123
>ref|NP_565944.1| ubiquitin-specific protease 5 (UBP5), putative; protein id:
At2g40930.1, supported by cDNA: gi_20466469, supported
by cDNA: gi_6648603 [Arabidopsis thaliana]
gi|6648604|gb|AAF21246.1|AF048705_1 ubiquitin-specific
protease; UBP5 [Arabidopsis thaliana]
gi|20196935|gb|AAB86453.2| ubiquitin-specific protease 5
(UBP5), putative [Arabidopsis thaliana]
gi|20466470|gb|AAM20552.1| putative ubiquitin carboxyl
terminal hydrolase [Arabidopsis thaliana]
gi|23198184|gb|AAN15619.1| putative ubiquitin carboxyl
terminal hydrolase [Arabidopsis thaliana]
Length = 924
Score = 147 bits (372), Expect = 5e-35
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Frame = +3
Query: 135 MTEVSMCSSSTS-ELSPDEERIMIRDIALASQANSKEGDTFFSITQRWWQHGIEYVNQDH 311
M EVSM SSS+S +LSP+EER+ IRDIA+A++ANSKEGDTF+ ITQRWWQ IEYVNQD
Sbjct: 1 MAEVSMGSSSSSTDLSPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQ 60
Query: 312 TNTSYDGSSFLEQCDMAYANVSKKASGIDNSDLIHDVAPEDSSTGIEIHDTL*EGREYVL 491
+ DGSS E CD ++ KK S IDNSDLI+D + ED S EI +TL EGR+YVL
Sbjct: 61 PCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVL 120
Query: 492 LPQ 500
LPQ
Sbjct: 121 LPQ 123
>gb|AAD03433.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family
2 (Pfam:PF00443, score=48.3, E=3.5e-13, N=2) and
(Pfam:PF00442, Score=40.0 E=5.2e-08, N=1) [Arabidopsis
thaliana]
Length = 1028
Score = 49.3 bits (116), Expect = 2e-05
Identities = 29/109 (26%), Positives = 54/109 (48%), Gaps = 1/109 (0%)
Frame = +3
Query: 177 SPDEERIMIRDIALASQANSKEGDTFFSITQRWWQHGIEYVNQDHTNTSYDGSSFLEQCD 356
+P+EE+ ++ ++ S+ N K+G+ +F I++RW+ EYV +C
Sbjct: 20 TPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEYVENS-----------ANECS 68
Query: 357 MAYANVSKKASGIDNSDLIHDVAPEDSS-TGIEIHDTL*EGREYVLLPQ 500
++ + + IDN HD+ DS ++ L EG +YVL+P+
Sbjct: 69 TGESSEAPRPGPIDN----HDIIESDSDINDPQLRRLLVEGEDYVLVPK 113
>ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arabidopsis thaliana]
gi|7487639|pir||T04192 hypothetical protein T4F9.30 -
Arabidopsis thaliana gi|4539435|emb|CAB40023.1| putative
protein [Arabidopsis thaliana]
gi|7267754|emb|CAB78180.1| putative protein [Arabidopsis
thaliana]
Length = 928
Score = 49.3 bits (116), Expect = 2e-05
Identities = 29/109 (26%), Positives = 54/109 (48%), Gaps = 1/109 (0%)
Frame = +3
Query: 177 SPDEERIMIRDIALASQANSKEGDTFFSITQRWWQHGIEYVNQDHTNTSYDGSSFLEQCD 356
+P+EE+ ++ ++ S+ N K+G+ +F I++RW+ EYV +C
Sbjct: 20 TPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEYVENS-----------ANECS 68
Query: 357 MAYANVSKKASGIDNSDLIHDVAPEDSS-TGIEIHDTL*EGREYVLLPQ 500
++ + + IDN HD+ DS ++ L EG +YVL+P+
Sbjct: 69 TGESSEAPRPGPIDN----HDIIESDSDINDPQLRRLLVEGEDYVLVPK 113
>gb|AAD03434.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family
2 (Pfam:PF00443, score=40.0, E=5.2e-08, N=1) and
(Pfam:PF00442, Score=37.9 E=5.3e-10, N=1) [Arabidopsis
thaliana]
Length = 887
Score = 47.8 bits (112), Expect = 7e-05
Identities = 35/122 (28%), Positives = 58/122 (46%)
Frame = +3
Query: 135 MTEVSMCSSSTSELSPDEERIMIRDIALASQANSKEGDTFFSITQRWWQHGIEYVNQDHT 314
M E +C T+ P+EE+ ++ ++ S+ N KEG+ +F I++RW+ +YV Q T
Sbjct: 9 MIENGVCDFPTT---PEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYVEQS-T 64
Query: 315 NTSYDGSSFLEQCDMAYANVSKKASGIDNSDLIHDVAPEDSSTGIEIHDTL*EGREYVLL 494
G S + + + IDN D+I E ++ L E +YVL+
Sbjct: 65 KEYISGES----------SEASRPGPIDNHDIIES---ESDVNDPQLRRLLMERVDYVLV 111
Query: 495 PQ 500
PQ
Sbjct: 112 PQ 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,008,368
Number of Sequences: 1393205
Number of extensions: 9572716
Number of successful extensions: 145770
Number of sequences better than 10.0: 1441
Number of HSP's better than 10.0 without gapping: 46481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82613
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
