Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000407A_C01 KMC000407A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702830.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.3
ref|NP_281834.1| putative integral membrane protein [Campylobact... 33 3.3
gb|EAA08846.1| agCP7892 [Anopheles gambiae str. PEST] 33 4.4
gb|AAB95091.2| 89B helicase [Drosophila melanogaster] 33 4.4
gb|EAA08964.1| agCP7746 [Anopheles gambiae str. PEST] 33 4.4
>ref|NP_702830.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498246|emb|CAD49217.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4832
Score = 33.1 bits (74), Expect = 3.3
Identities = 20/75 (26%), Positives = 34/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 10 NISL*MTHNLNSKHR---PDLVQTNHMHFQIGPIISNKNEPRSRHFSGLAHHKTNNHGLH 180
N ++ HN+ S H D ++ +H H + I N + ++ H H+ NNH +
Sbjct: 231 NHNIKSNHNIKSNHNIKNDDNIKNDH-HIKNNHHIKNNHNIKNNHNIKNNHNIKNNHNIK 289
Query: 181 KNMKRKKARSEVKSN 225
NMK K + K +
Sbjct: 290 NNMKEKNLLVDEKKD 304
>ref|NP_281834.1| putative integral membrane protein [Campylobacter jejuni]
gi|11346928|pir||B81414 probable integral membrane
protein Cj0651 [imported] - Campylobacter jejuni (strain
NCTC 11168) gi|6968118|emb|CAB75287.1| putative integral
membrane protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
Length = 164
Score = 33.1 bits (74), Expect = 3.3
Identities = 19/72 (26%), Positives = 34/72 (46%)
Frame = -1
Query: 380 LFILYPFIIMCFVCHWISGINNLWYINI*T*NLNMALFVFHSSICIGAYVMAFDFTSLLA 201
+F Y F ++ S ++ WY ++ F+F + I ++ F+S LA
Sbjct: 42 IFFCYMFCLLEERERTFSKLDFRWYFSL--------FFLFFTDITYNFFI----FSSWLA 89
Query: 200 FFLFMFLCRPWL 165
FF+F +LC W+
Sbjct: 90 FFIFYYLCADWI 101
>gb|EAA08846.1| agCP7892 [Anopheles gambiae str. PEST]
Length = 238
Score = 32.7 bits (73), Expect = 4.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 262 SIPVSVLVPMLWHLTLLHFLPFSFSCFCVGRGC*FCGVLGLKNVLIWAR 116
SIP+ + +L+ T H P + +G G FCG + NV +W R
Sbjct: 26 SIPIFLTGIILYTFTQFHSTPAIVTSILIGVGIVFCGGAMVHNVFVWQR 74
>gb|AAB95091.2| 89B helicase [Drosophila melanogaster]
Length = 913
Score = 32.7 bits (73), Expect = 4.4
Identities = 29/83 (34%), Positives = 38/83 (44%), Gaps = 6/83 (7%)
Frame = -1
Query: 341 CHWISGINNLWYINI*T*NLN------MALFVFHSSICIGAYVMAFDFTSLLAFFLFMFL 180
C+ +GIN LW++N NL+ M L +ICI A T+ LA + +
Sbjct: 342 CYQQAGINWLWFLN--KYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVI 399
Query: 179 CRPWLLVLWCARPEKCLDLGSFL 111
C P L W EK LD GS L
Sbjct: 400 CPPTLTGHWVYEVEKFLDQGSVL 422
>gb|EAA08964.1| agCP7746 [Anopheles gambiae str. PEST]
Length = 281
Score = 32.7 bits (73), Expect = 4.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 262 SIPVSVLVPMLWHLTLLHFLPFSFSCFCVGRGC*FCGVLGLKNVLIWAR 116
SIP+ + +L+ T H P + +G G FCG + NV +W R
Sbjct: 101 SIPIFLTGIILYTFTQFHSTPAIVTSILIGVGIVFCGGAMVHNVFVWQR 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,693,654
Number of Sequences: 1393205
Number of extensions: 12763297
Number of successful extensions: 31706
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31653
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
