Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000406A_C01 KMC000406A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_240486.1| hypothetical protein XP_240486 [Rattus norvegicus] 35 0.63
ref|XP_241878.1| hypothetical protein XP_241878 [Rattus norvegicus] 32 4.1
ref|XP_147390.1| hypothetical protein XP_147390 [Mus musculus] 32 5.3
ref|NP_208013.1| conserved hypothetical protein [Helicobacter py... 31 7.0
ref|NP_114169.1| keratin associated protein 9.8 [Homo sapiens] g... 31 7.0
>ref|XP_240486.1| hypothetical protein XP_240486 [Rattus norvegicus]
Length = 387
Score = 34.7 bits (78), Expect = 0.63
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 280 CAWPPPRTCVGKTLKTQNSKHQILAPRMWVDQTTHMSGHQVFPAVAPRMCVGY 438
C W PP + K+L Q S+ +LA + +D G ++ + PR+C+GY
Sbjct: 215 CPWRPPE--LSKSLNRQVSQADLLAAHLCLDGHGPYQGREMDQSRIPRVCLGY 265
>ref|XP_241878.1| hypothetical protein XP_241878 [Rattus norvegicus]
Length = 282
Score = 32.0 bits (71), Expect = 4.1
Identities = 21/80 (26%), Positives = 36/80 (44%)
Frame = +3
Query: 87 REISQAWLGNS*CKLKE*KPERRGPRSLPQAPRT*TSKFCSKSYKIPKRNNKIPIYRVSS 266
R S+ W G+S R+G R P+ R+ S + +K+P+ +K+ + VS
Sbjct: 206 RVTSRGWEGDS---------HRQGRREWPERARSGISGGIRRRHKLPRHQHKVVVI-VSH 255
Query: 267 SNPRMCVASSTHMRGQNAQN 326
S P + + GQ Q+
Sbjct: 256 SKPHAAAVTPPPLPGQRGQS 275
>ref|XP_147390.1| hypothetical protein XP_147390 [Mus musculus]
Length = 205
Score = 31.6 bits (70), Expect = 5.3
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 466 NQMSHACAP-CIPRTCVELLQEKPDAHSCASSDPPTCVVPKSDASNFAF*AFCPRMC 299
+ +S C P C P CV P + CASS P+C P S S A C + C
Sbjct: 148 SSLSLLCRPVCRPACCV------PTSSCCASSCQPSCCRPTSSVSLLCRPACCRQAC 198
>ref|NP_208013.1| conserved hypothetical protein [Helicobacter pylori 26695]
gi|2501567|sp|P55984|UPPS_HELPY Undecaprenyl
pyrophosphate synthetase (UPP synthetase)
(Di-trans-poly-cis-decaprenylcistransferase)
(Undecaprenyl diphosphate synthase) (UDS)
gi|7447509|pir||E64672 conserved hypothetical protein
HP1221 - Helicobacter pylori (strain 26695)
gi|2314380|gb|AAD08263.1| conserved hypothetical protein
[Helicobacter pylori 26695]
Length = 234
Score = 31.2 bits (69), Expect = 7.0
Identities = 21/65 (32%), Positives = 30/65 (45%)
Frame = -1
Query: 357 WCQNLMLRILRFERFAHACAWRRPRTCVDYCWKLYK*GFCYFF*GSCNFLNKT*RFRFLE 178
WC N L L F+ W+RP++ VD+ K+ K Y +LN RFR +
Sbjct: 43 WCANHKLECLTLYAFSTE-NWKRPKSEVDFLMKMLK---KYLKDERSTYLNNNIRFRAIG 98
Query: 177 LVGGF 163
+ GF
Sbjct: 99 DLEGF 103
>ref|NP_114169.1| keratin associated protein 9.8 [Homo sapiens]
gi|12655474|emb|CAC27589.1| keratin associated protein
9.8 [Homo sapiens]
Length = 159
Score = 31.2 bits (69), Expect = 7.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 460 MSHACAPCIPRTCVELLQEKPDAHSCASSDP---PTCVV 353
M+H C+PC TC KP + SS P P+C V
Sbjct: 1 MTHCCSPCCQPTCCRTTCWKPTTVTTCSSTPCCQPSCCV 39
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,468,209
Number of Sequences: 1393205
Number of extensions: 10028117
Number of successful extensions: 36253
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36245
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
