Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000405A_C01 KMC000405A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02918|N36A_SOYBN EARLY NODULIN 36A gi|486676|pir||S34798 nod... 62 5e-09
emb|CAA48906.1| nodulin [Glycine max] gi|18583|emb|CAA48907.1| n... 36 0.26
ref|XP_144828.1| similar to immunoglobulin light chain variable ... 36 0.35
sp|Q02919|N36B_SOYBN EARLY NODULIN 36B gi|486677|pir||S34799 nod... 35 0.59
pir||S52630 nodulin ENOD40, early - garden pea gi|1345566|emb|CA... 31 8.5
>sp|Q02918|N36A_SOYBN EARLY NODULIN 36A gi|486676|pir||S34798 nodulin (clone GmN36a) -
soybean gi|218256|dbj|BAA02721.1| early nodulin [Glycine
max] gi|447136|prf||1913422B nodulin
Length = 90
Score = 62.0 bits (149), Expect = 5e-09
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = -3
Query: 506 VTSHTPPLPTVCLGFSFWLL*SPWRYAQTFSLSSRRSR*AFSKRSRDFGYSLASRQVTKR 327
+T+HTPPL TVC G + L + TFSL ++ +R R FGYSLA+RQVTKR
Sbjct: 10 LTTHTPPLKTVCFGLALASLINKG-CVLTFSLEWQKQI-CILQRRRGFGYSLANRQVTKR 67
Query: 326 QWTPLG 309
QWTPLG
Sbjct: 68 QWTPLG 73
>emb|CAA48906.1| nodulin [Glycine max] gi|18583|emb|CAA48907.1| nodulin [Glycine
max]
Length = 93
Score = 36.2 bits (82), Expect = 0.26
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -3
Query: 506 VTSHTPPLPTVCLGFSFWLL*SPWRYAQTFSLSSRRSR*AFSKRSRDFGYSLASRQVTKR 327
+T HTP L TVC G + L + TF L R+ + +R R + + + KR
Sbjct: 5 LTPHTPSLKTVCFGLALASLINK-GCVLTFFLEWRK-QIHILRRRRGLATAWQTGKSQKR 62
Query: 326 QWTPLG-VRMAKSHSKL*FFILECN 255
QWTPLG + + +H L +ECN
Sbjct: 63 QWTPLGSLWLCSAHVVL--LAVECN 85
>ref|XP_144828.1| similar to immunoglobulin light chain variable region [Mus
musculus]
Length = 113
Score = 35.8 bits (81), Expect = 0.35
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 333 CDLPACQAVAKVSAPFGECSSASSATQRECLSIPPW*SQKPKAKAQTNCWKWRSVRGDST 512
CD+ Q+ A +SAP GE S + E S W QKP Q + S+ GD
Sbjct: 20 CDIQVTQSPASLSAPVGESVSITCKASEEIYSALNWYQQKPGKSPQLLIYYATSL-GDDV 78
Query: 513 LSHFS 527
S FS
Sbjct: 79 PSRFS 83
>sp|Q02919|N36B_SOYBN EARLY NODULIN 36B gi|486677|pir||S34799 nodulin (clone GmN36b) -
soybean (fragment) gi|218258|dbj|BAA02722.1| early
nodulin [Glycine max]
Length = 93
Score = 35.0 bits (79), Expect = 0.59
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -3
Query: 506 VTSHTPPLPTVCLGFSFWLL*SPWRYAQTFSLSSRRSR*AFSKRSRDFGYSLASRQVTKR 327
+T HTP L TVC G + L + TF L R+ + +R R + + + KR
Sbjct: 5 LTPHTPSLKTVCFGLALASLINK-GCVLTFFLEWRK-QIHILRRRRGLATAWQTGKSQKR 62
Query: 326 QWTPLG-VRMAKSHSKL*FFILECN 255
QWTPLG + + +H L +ECN
Sbjct: 63 QWTPLGSLWLCIAHVVL--LAVECN 85
>pir||S52630 nodulin ENOD40, early - garden pea gi|1345566|emb|CAA56950.1| early
noduline 40 [Pisum sativum]
Length = 75
Score = 31.2 bits (69), Expect = 8.5
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -1
Query: 373 AETLATAWQAGKSQKGNGLH*GFEWLNLTLNYSSLF 266
+E L WQ GKSQKGNG G L Y SL+
Sbjct: 8 SEALVIVWQTGKSQKGNGFLFGV----LMAMYQSLY 39
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,513,616
Number of Sequences: 1393205
Number of extensions: 8014886
Number of successful extensions: 20350
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20334
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
