Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000404A_C01 KMC000404A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_729188.1| CG32394-PA [Drosophila melanogaster] gi|2309405... 35 1.2
gb|AAG22800.1|AF295403_1 secretory carrier membrane protein 3 [M... 33 2.6
gb|AAH02021.1| Similar to secretory carrier membrane protein 3 [... 33 2.6
gb|EAA29177.1| hypothetical protein [Neurospora crassa] 33 2.6
gb|AAG22801.1|AF295404_1 secretory carrier membrane protein 3 [R... 33 3.3
>ref|NP_729188.1| CG32394-PA [Drosophila melanogaster] gi|23094059|gb|AAN12081.1|
CG32394-PA [Drosophila melanogaster]
Length = 2465
Score = 34.7 bits (78), Expect = 1.2
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +1
Query: 292 SKATKPSPFQKKRPAKSNNHEPLQ-D*NHMRYYCQNRSHRPTSHNKTSISMFPVQ-PKSN 465
S++T PSP+ + P H P + SH P +H + M V+ P S+
Sbjct: 1487 SQSTHPSPYHNQSPYHQQQHSPYHPPAAQQQQQSSQPSHSPAAHQQALSPMHSVESPASS 1546
Query: 466 SQYSCQTNEPTGPSVREHSAQGMPVTHSLSQ 558
+ T P+ ++HS PV Q
Sbjct: 1547 AATQPPTPLAQSPAEQQHSPYQQPVLSPYQQ 1577
>gb|AAG22800.1|AF295403_1 secretory carrier membrane protein 3 [Mus musculus]
Length = 349
Score = 33.5 bits (75), Expect = 2.6
Identities = 25/57 (43%), Positives = 34/57 (58%), Gaps = 7/57 (12%)
Frame = -2
Query: 220 SFSFPIFFLVKF**DIFF---KIYL*GWG--GLI--LVVVLLLTVSVVMLLLLALLF 71
SF+F +FF + F D+FF I + GWG G + LVVV V++LL+ALLF
Sbjct: 232 SFNFFVFFFIFFVQDVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLF 288
>gb|AAH02021.1| Similar to secretory carrier membrane protein 3 [Mus musculus]
Length = 350
Score = 33.5 bits (75), Expect = 2.6
Identities = 25/57 (43%), Positives = 34/57 (58%), Gaps = 7/57 (12%)
Frame = -2
Query: 220 SFSFPIFFLVKF**DIFF---KIYL*GWG--GLI--LVVVLLLTVSVVMLLLLALLF 71
SF+F +FF + F D+FF I + GWG G + LVVV V++LL+ALLF
Sbjct: 233 SFNFFVFFFIFFVQDVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLF 289
>gb|EAA29177.1| hypothetical protein [Neurospora crassa]
Length = 1321
Score = 33.5 bits (75), Expect = 2.6
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 328 RPAKSNNHEPLQD*NHMRYYCQNRSHRPTSHNKTS---ISMFPVQPKSNSQYSCQTNEPT 498
+PA + H+PL H + ++ P H+ +S +S P P+ N +T +
Sbjct: 1253 QPAAAEQHQPLSFLRHWNSHTAQQNQPPPLHHTSSYQQVSGLPPPPRDNKPKDMKTGASS 1312
Query: 499 GPSVR 513
PS+R
Sbjct: 1313 SPSLR 1317
>gb|AAG22801.1|AF295404_1 secretory carrier membrane protein 3 [Rattus norvegicus]
Length = 226
Score = 33.1 bits (74), Expect = 3.3
Identities = 25/57 (43%), Positives = 34/57 (58%), Gaps = 7/57 (12%)
Frame = -2
Query: 220 SFSFPIFFLVKF**DIFF---KIYL*GWG--GLI--LVVVLLLTVSVVMLLLLALLF 71
SF+F +FF + F D+FF I + GWG G + LVVV V++LL+ALLF
Sbjct: 109 SFNFFVFFFIFFVQDVFFVLQAIGIPGWGFSGWVSALVVVGSNPAVAVLMLLVALLF 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,836,968
Number of Sequences: 1393205
Number of extensions: 12355709
Number of successful extensions: 36772
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 34955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36580
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
