Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000403A_C01 KMC000403A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176133.1| glycosyl hydrolase family 10; protein id: At1g5... 188 5e-47
pir||D96617 probable xylan endohydrolase isoenzyme F9K23.10 [imp... 188 5e-47
ref|NP_192556.1| glycosyl hydrolase family 10; protein id: At4g0... 179 2e-44
dbj|BAC42019.1| putative xylan endohydrolase [Arabidopsis thalia... 179 2e-44
ref|NP_172476.1| glycosyl hydrolase family 10; protein id: At1g1... 179 2e-44
>ref|NP_176133.1| glycosyl hydrolase family 10; protein id: At1g58370.1, supported by
cDNA: gi_6566262 [Arabidopsis thaliana]
gi|25454669|pir||T52467 hypothetical protein RXF12
[imported] - Arabidopsis thaliana
gi|6566263|dbj|BAA88262.1| similar to xylan endohydrolase
[Arabidopsis thaliana]
gi|8979937|gb|AAF82251.1|AC008051_2 Identical to gene
RXF12 from Arabidopsis thaliana gb|AB008015 and contains
three Cellulose binding PF|02018 domains and is a member
of Glycosyl hydrolase PF|00331 family
gi|18181931|dbj|BAB83869.1| xylan endohydrolase
[Arabidopsis thaliana]
Length = 917
Score = 188 bits (477), Expect = 5e-47
Identities = 87/126 (69%), Positives = 106/126 (84%), Gaps = 1/126 (0%)
Frame = -1
Query: 589 FTELDVSSIYEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINE 410
FTELDVSS+ EH+RADDLEVM+ EA HPAVEGIMLWGFWELFMSRDNSHLVNAEGD+NE
Sbjct: 789 FTELDVSSVNEHIRADDLEVMMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEGDVNE 848
Query: 409 AGKRFLDLKREWLSHKHDHVDEHGQFSFRGFHGTYNVEVV-TPTKKISKTFVLDKGDSPM 233
AGKRFL +K++WLSH + H+D++G F FRG+ G Y VEV+ T + K+ KTF +DK DS
Sbjct: 849 AGKRFLAVKKDWLSHANGHIDQNGAFPFRGYSGNYAVEVITTSSSKVLKTFGVDKEDSSQ 908
Query: 232 VVSIDL 215
V+++DL
Sbjct: 909 VITVDL 914
>pir||D96617 probable xylan endohydrolase isoenzyme F9K23.10 [imported] -
Arabidopsis thaliana gi|12321045|gb|AAG50641.1|AC082643_5
xylan endohydrolase isoenzyme, putative [Arabidopsis
thaliana]
Length = 915
Score = 188 bits (477), Expect = 5e-47
Identities = 87/126 (69%), Positives = 106/126 (84%), Gaps = 1/126 (0%)
Frame = -1
Query: 589 FTELDVSSIYEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINE 410
FTELDVSS+ EH+RADDLEVM+ EA HPAVEGIMLWGFWELFMSRDNSHLVNAEGD+NE
Sbjct: 787 FTELDVSSVNEHIRADDLEVMMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEGDVNE 846
Query: 409 AGKRFLDLKREWLSHKHDHVDEHGQFSFRGFHGTYNVEVV-TPTKKISKTFVLDKGDSPM 233
AGKRFL +K++WLSH + H+D++G F FRG+ G Y VEV+ T + K+ KTF +DK DS
Sbjct: 847 AGKRFLAVKKDWLSHANGHIDQNGAFPFRGYSGNYAVEVITTSSSKVLKTFGVDKEDSSQ 906
Query: 232 VVSIDL 215
V+++DL
Sbjct: 907 VITVDL 912
>ref|NP_192556.1| glycosyl hydrolase family 10; protein id: At4g08160.1 [Arabidopsis
thaliana] gi|25407432|pir||E85080 probable xylan
endohydrolase [imported] - Arabidopsis thaliana
gi|4689448|gb|AAD27896.1|AC006267_1 putative xylan
endohydrolase [Arabidopsis thaliana]
gi|7267456|emb|CAB81152.1| putative xylan endohydrolase
[Arabidopsis thaliana]
Length = 520
Score = 179 bits (455), Expect = 2e-44
Identities = 81/125 (64%), Positives = 106/125 (84%)
Frame = -1
Query: 589 FTELDVSSIYEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINE 410
FTELDVSS E+VR +DLEVML EA AHP+VEGIMLWGFWEL MSR+N++LV EG++NE
Sbjct: 393 FTELDVSSSNEYVRGEDLEVMLWEAFAHPSVEGIMLWGFWELSMSRENANLVEGEGEVNE 452
Query: 409 AGKRFLDLKREWLSHKHDHVDEHGQFSFRGFHGTYNVEVVTPTKKISKTFVLDKGDSPMV 230
AGKRFL++K+EWLSH + +++ +F+FRG+HGTY VE+ TP + KTFV++KGD+P+V
Sbjct: 453 AGKRFLEVKQEWLSHAYGIINDESEFTFRGYHGTYAVEICTPAGIVLKTFVVEKGDTPLV 512
Query: 229 VSIDL 215
+SIDL
Sbjct: 513 ISIDL 517
>dbj|BAC42019.1| putative xylan endohydrolase [Arabidopsis thaliana]
gi|29029036|gb|AAO64897.1| At4g08160 [Arabidopsis
thaliana]
Length = 752
Score = 179 bits (455), Expect = 2e-44
Identities = 81/125 (64%), Positives = 106/125 (84%)
Frame = -1
Query: 589 FTELDVSSIYEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINE 410
FTELDVSS E+VR +DLEVML EA AHP+VEGIMLWGFWEL MSR+N++LV EG++NE
Sbjct: 625 FTELDVSSSNEYVRGEDLEVMLWEAFAHPSVEGIMLWGFWELSMSRENANLVEGEGEVNE 684
Query: 409 AGKRFLDLKREWLSHKHDHVDEHGQFSFRGFHGTYNVEVVTPTKKISKTFVLDKGDSPMV 230
AGKRFL++K+EWLSH + +++ +F+FRG+HGTY VE+ TP + KTFV++KGD+P+V
Sbjct: 685 AGKRFLEVKQEWLSHAYGIINDESEFTFRGYHGTYAVEICTPVGIVLKTFVVEKGDTPLV 744
Query: 229 VSIDL 215
+SIDL
Sbjct: 745 ISIDL 749
>ref|NP_172476.1| glycosyl hydrolase family 10; protein id: At1g10050.1 [Arabidopsis
thaliana] gi|7484945|pir||T00624 endo-1,4-beta-xylanase
homolog T27I1.7 - Arabidopsis thaliana
gi|3540184|gb|AAC34334.1| Similar to endoxylanases
[Arabidopsis thaliana]
Length = 1063
Score = 179 bits (455), Expect = 2e-44
Identities = 84/125 (67%), Positives = 101/125 (80%)
Frame = -1
Query: 589 FTELDVSSIYEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINE 410
FTELDVSS EH+R DDLEVML EA AHPAVEG+MLWGFWELFMSR++SHLVNA+G++NE
Sbjct: 939 FTELDVSSTNEHIRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREHSHLVNADGEVNE 998
Query: 409 AGKRFLDLKREWLSHKHDHVDEHGQFSFRGFHGTYNVEVVTPTKKISKTFVLDKGDSPMV 230
AGKRFL++KREWLS +++ G FRG+HG+Y VEVVT K FV+DKG+SP+
Sbjct: 999 AGKRFLEIKREWLSFVDGEIEDGGGLEFRGYHGSYTVEVVTSESKYVTNFVVDKGNSPVD 1058
Query: 229 VSIDL 215
V IDL
Sbjct: 1059 VIIDL 1063
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,945,104
Number of Sequences: 1393205
Number of extensions: 10448028
Number of successful extensions: 24328
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 23350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24285
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
