Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000399A_C02 KMC000399A_c02
(794 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568107.1| putative protein; protein id: At5g02810.1, supp... 87 2e-16
pir||T48302 hypothetical protein F9G14.120 - Arabidopsis thalian... 87 2e-16
ref|NP_568919.1| pseudo-response regulator - like; protein id: A... 85 1e-15
ref|NP_568446.1| putative protein; protein id: At5g24470.1, supp... 82 1e-14
dbj|BAB08930.1| contains similarity to two-component response re... 82 1e-14
>ref|NP_568107.1| putative protein; protein id: At5g02810.1, supported by cDNA:
gi_10281003, supported by cDNA: gi_14532637 [Arabidopsis
thaliana] gi|10281004|dbj|BAB13742.1| pseudo-response
regulator 7 [Arabidopsis thaliana]
gi|14532638|gb|AAK64047.1| unknown protein [Arabidopsis
thaliana] gi|23296600|gb|AAN13129.1| unknown protein
[Arabidopsis thaliana]
Length = 727
Score = 87.4 bits (215), Expect = 2e-16
Identities = 41/54 (75%), Positives = 46/54 (84%)
Frame = -1
Query: 749 NVXDEERTALREAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRRT 588
N+ DE + + REAAL KFR KRKERCF KKVRY SRKKLAEQRPR+RGQFVR+T
Sbjct: 659 NLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT 712
>pir||T48302 hypothetical protein F9G14.120 - Arabidopsis thaliana
gi|7413556|emb|CAB86035.1| putative protein [Arabidopsis
thaliana]
Length = 720
Score = 87.4 bits (215), Expect = 2e-16
Identities = 41/54 (75%), Positives = 46/54 (84%)
Frame = -1
Query: 749 NVXDEERTALREAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRRT 588
N+ DE + + REAAL KFR KRKERCF KKVRY SRKKLAEQRPR+RGQFVR+T
Sbjct: 652 NLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT 705
>ref|NP_568919.1| pseudo-response regulator - like; protein id: At5g60100.1,
supported by cDNA: gi_10281007 [Arabidopsis thaliana]
gi|8777349|dbj|BAA96939.1|
emb|CAB86035.1~gene_id:MGO3.8~similar to unknown protein
[Arabidopsis thaliana] gi|10281008|dbj|BAB13744.1|
pseudo-response regulator 3 [Arabidopsis thaliana]
Length = 495
Score = 84.7 bits (208), Expect = 1e-15
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = -1
Query: 734 ERTALREAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRR 591
+R A REAAL KFRLKRKERCFEKKVRYHSRKKLAEQRP ++GQF+R+
Sbjct: 437 DRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484
>ref|NP_568446.1| putative protein; protein id: At5g24470.1, supported by cDNA:
gi_10281005 [Arabidopsis thaliana]
gi|10281006|dbj|BAB13743.1| pseudo-response regulator 5
[Arabidopsis thaliana]
Length = 667
Score = 81.6 bits (200), Expect = 1e-14
Identities = 39/65 (60%), Positives = 54/65 (83%), Gaps = 4/65 (6%)
Frame = -1
Query: 773 VVDRKN----TMNVXDEERTALREAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRG 606
++++KN +++V +++ REAAL KFR+KRK+RC+EKKVRY SRKKLAEQRPRI+G
Sbjct: 596 LIEKKNEDGYSLSVGKIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKG 655
Query: 605 QFVRR 591
QFVR+
Sbjct: 656 QFVRQ 660
>dbj|BAB08930.1| contains similarity to two-component response regulator
protein~gene_id:T31K7.5 [Arabidopsis thaliana]
gi|17063183|gb|AAL32986.1| pseudo-response regulator 5
protein [Arabidopsis thaliana]
gi|23506027|gb|AAN28873.1| At5g24470/T31K7_5
[Arabidopsis thaliana]
Length = 558
Score = 81.6 bits (200), Expect = 1e-14
Identities = 39/65 (60%), Positives = 54/65 (83%), Gaps = 4/65 (6%)
Frame = -1
Query: 773 VVDRKN----TMNVXDEERTALREAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRG 606
++++KN +++V +++ REAAL KFR+KRK+RC+EKKVRY SRKKLAEQRPRI+G
Sbjct: 487 LIEKKNEDGYSLSVGKIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKG 546
Query: 605 QFVRR 591
QFVR+
Sbjct: 547 QFVRQ 551
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 666,443,245
Number of Sequences: 1393205
Number of extensions: 14693275
Number of successful extensions: 34132
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 32808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34084
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
