Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000395A_C02 KMC000395A_c02
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172709.1| hypothetical protein; protein id: At1g12470.1 [... 120 9e-27
pir||B86259 protein T12C24.2 [imported] - Arabidopsis thaliana g... 120 9e-27
gb|AAF79641.1|AC025416_15 F5O11.22 [Arabidopsis thaliana] 120 9e-27
sp|Q8R307|VP18_MOUSE Vacuolar protein sorting 18 gi|20071269|gb|... 49 5e-05
dbj|BAC28236.1| unnamed protein product [Mus musculus] 49 5e-05
>ref|NP_172709.1| hypothetical protein; protein id: At1g12470.1 [Arabidopsis thaliana]
Length = 994
Score = 120 bits (302), Expect = 9e-27
Identities = 62/101 (61%), Positives = 79/101 (77%)
Frame = -1
Query: 556 EAHAEYILDLQKQLTLIGSEARRESNGTLSSEESIPSTITVEKLRSQLDDAIASECPFCG 377
E AE+ILDLQKQLTL+GSE RR+ NG S+E I ST T +KLRS+LDDAIASECPFCG
Sbjct: 895 EEQAEHILDLQKQLTLLGSETRRDINGN-RSDEPITSTTTADKLRSELDDAIASECPFCG 953
Query: 376 DLMIREISLSFILPEEEQHVLSWEIKPEIKPNVGSQRSITL 254
+LMI EI+L FI PE+ Q+ SW+++ E N+ +QR+I+L
Sbjct: 954 ELMINEITLPFIKPEDSQYSTSWDLRSE--TNLANQRTISL 992
>pir||B86259 protein T12C24.2 [imported] - Arabidopsis thaliana
gi|9502367|gb|AAF88074.1|AC025417_2 T12C24.2 [Arabidopsis
thaliana]
Length = 1010
Score = 120 bits (302), Expect = 9e-27
Identities = 62/101 (61%), Positives = 79/101 (77%)
Frame = -1
Query: 556 EAHAEYILDLQKQLTLIGSEARRESNGTLSSEESIPSTITVEKLRSQLDDAIASECPFCG 377
E AE+ILDLQKQLTL+GSE RR+ NG S+E I ST T +KLRS+LDDAIASECPFCG
Sbjct: 911 EEQAEHILDLQKQLTLLGSETRRDINGN-RSDEPITSTTTADKLRSELDDAIASECPFCG 969
Query: 376 DLMIREISLSFILPEEEQHVLSWEIKPEIKPNVGSQRSITL 254
+LMI EI+L FI PE+ Q+ SW+++ E N+ +QR+I+L
Sbjct: 970 ELMINEITLPFIKPEDSQYSTSWDLRSE--TNLANQRTISL 1008
>gb|AAF79641.1|AC025416_15 F5O11.22 [Arabidopsis thaliana]
Length = 1063
Score = 120 bits (302), Expect = 9e-27
Identities = 62/101 (61%), Positives = 79/101 (77%)
Frame = -1
Query: 556 EAHAEYILDLQKQLTLIGSEARRESNGTLSSEESIPSTITVEKLRSQLDDAIASECPFCG 377
E AE+ILDLQKQLTL+GSE RR+ NG S+E I ST T +KLRS+LDDAIASECPFCG
Sbjct: 964 EEQAEHILDLQKQLTLLGSETRRDINGN-RSDEPITSTTTADKLRSELDDAIASECPFCG 1022
Query: 376 DLMIREISLSFILPEEEQHVLSWEIKPEIKPNVGSQRSITL 254
+LMI EI+L FI PE+ Q+ SW+++ E N+ +QR+I+L
Sbjct: 1023 ELMINEITLPFIKPEDSQYSTSWDLRSE--TNLANQRTISL 1061
>sp|Q8R307|VP18_MOUSE Vacuolar protein sorting 18 gi|20071269|gb|AAH26870.1| Unknown
(protein for IMAGE:3966039) [Mus musculus]
Length = 714
Score = 48.5 bits (114), Expect = 5e-05
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Frame = -1
Query: 532 DLQKQLTLIGSEARRESNGTLSSEESIPSTITV----EKLRSQLDDAIASECPFCGDLMI 365
+LQ++L A + G++ ++E+ V E+L++ LD+ +A+EC +CG+LMI
Sbjct: 638 ELQRKL----GAAPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMI 693
Query: 364 REISLSFILPE--EEQHVLSW 308
R I FI P+ EE+H LSW
Sbjct: 694 RSIDRPFIDPQRYEEEH-LSW 713
>dbj|BAC28236.1| unnamed protein product [Mus musculus]
Length = 973
Score = 48.5 bits (114), Expect = 5e-05
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Frame = -1
Query: 532 DLQKQLTLIGSEARRESNGTLSSEESIPSTITV----EKLRSQLDDAIASECPFCGDLMI 365
+LQ++L A + G++ ++E+ V E+L++ LD+ +A+EC +CG+LMI
Sbjct: 897 ELQRKL----GAAPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMI 952
Query: 364 REISLSFILPE--EEQHVLSW 308
R I FI P+ EE+H LSW
Sbjct: 953 RSIDRPFIDPQRYEEEH-LSW 972
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,193,633
Number of Sequences: 1393205
Number of extensions: 9842463
Number of successful extensions: 26728
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 25736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26693
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
