Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000394A_C02 KMC000394A_c02
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194494.2| putative protein; protein id: At4g27640.1, supp... 98 9e-20
dbj|BAC43011.1| unknown protein [Arabidopsis thaliana] 97 2e-19
ref|NP_702329.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.32
ref|NP_705299.1| hypothetical protein [Plasmodium falciparum 3D7... 34 2.0
ref|NP_704273.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.7
>ref|NP_194494.2| putative protein; protein id: At4g27640.1, supported by cDNA:
gi_17065301 [Arabidopsis thaliana]
gi|17065302|gb|AAL32805.1| putative protein [Arabidopsis
thaliana]
Length = 1048
Score = 98.2 bits (243), Expect = 9e-20
Identities = 46/78 (58%), Positives = 61/78 (77%)
Frame = -1
Query: 670 CVSTLVVSSDPRILSQVPELVNLFAHVVASPVETSEVKALVGRACSHLVSLYGQQIQPLL 491
C+ +LV SS+P+I S VPELV +F V+ SPVE EVKA+VGR SHL+S+YG Q+QP++
Sbjct: 971 CIYSLVSSSNPQIFSHVPELVKIFGQVLESPVEKVEVKAIVGRTFSHLISVYGNQLQPII 1030
Query: 490 SNLPPAHANALSAFAPRS 437
S+LPP+ AN L+AFA S
Sbjct: 1031 SSLPPSQANVLAAFASTS 1048
>dbj|BAC43011.1| unknown protein [Arabidopsis thaliana]
Length = 721
Score = 97.1 bits (240), Expect = 2e-19
Identities = 46/78 (58%), Positives = 59/78 (74%)
Frame = -1
Query: 670 CVSTLVVSSDPRILSQVPELVNLFAHVVASPVETSEVKALVGRACSHLVSLYGQQIQPLL 491
C+ +LV SS P+I S VPELV F V+ SPVE EVKA+VGR SHL+S+YG Q+QP++
Sbjct: 644 CIYSLVSSSSPQIFSHVPELVKFFGQVLESPVEKVEVKAIVGRTFSHLISVYGNQLQPII 703
Query: 490 SNLPPAHANALSAFAPRS 437
S+LPP+ AN L+AFA S
Sbjct: 704 SSLPPSQANVLAAFASTS 721
>ref|NP_702329.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497511|gb|AAN37053.1|AE014823_33 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1191
Score = 36.6 bits (83), Expect = 0.32
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = +1
Query: 1 TNKNN*EFIKLENIYHYTLEKCP--DFQNINLMCNSHSSKPVKTTQQSKFLKMEEKKIN* 174
T K N FI IY + +K D N N C+S+ K + M+ IN
Sbjct: 245 TPKENIPFINTYEIYISSCDKIKECDLSNENY-CSSYHEKIYNN------IHMKYNNINL 297
Query: 175 YYI*KSNK*HKKQLKKQGGKKNNSVSKRKIRRHWRNSSNLVKCNDLPPR 321
Y K++K KK KK+G K+N+ + +K++ +++S+ N LP R
Sbjct: 298 Y---KNSKRRKK--KKKGDKENDLLDNKKVKNKEKSTSDKELTNSLPSR 341
>ref|NP_705299.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615544|emb|CAD52536.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 955
Score = 33.9 bits (76), Expect = 2.0
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 97 NSHSSKPVKTTQQSKFLKMEEKKIN*YYI*KSNK*HKKQLKKQGGKKNNSVSKRKIRRHW 276
N K V + K K ++KK+N K K KK+ KK+ KK N K+K+ +
Sbjct: 33 NKEDKKKVNKEDKKKVNKEDKKKVNKEDKKKDKKKDKKKDKKKDKKKVNKKDKKKVNKKD 92
Query: 277 RNSSNLVKCN 306
+ N + N
Sbjct: 93 KEKDNKLNRN 102
>ref|NP_704273.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499012|emb|CAD51092.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 552
Score = 33.5 bits (75), Expect = 2.7
Identities = 24/73 (32%), Positives = 33/73 (44%)
Frame = +1
Query: 73 FQNINLMCNSHSSKPVKTTQQSKFLKMEEKKIN*YYI*KSNK*HKKQLKKQGGKKNNSVS 252
F+NIN + KT++ S + +KK I K+ K KKQ KKQ K +
Sbjct: 313 FKNINAKTSLSKISCRKTSKNSNDISKRKKKT----ITKTKKKTKKQKKKQKKTKTKIKN 368
Query: 253 KRKIRRHWRNSSN 291
K K +H N N
Sbjct: 369 KNKTNKHKDNKGN 381
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,255,537
Number of Sequences: 1393205
Number of extensions: 11422567
Number of successful extensions: 32285
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32234
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
