Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000393A_C06 KMC000393A_c06
(1059 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178632.1| unknown protein; protein id: At2g05640.1 [Arabi... 156 5e-37
gb|AAG52315.1|AC021666_4 hypothetical protein, 5' partial; 93859... 149 9e-35
ref|NP_174828.1| hypothetical protein; protein id: At1g35940.1 [... 149 9e-35
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 145 1e-33
ref|NP_187933.1| hypothetical protein; protein id: At3g13250.1 [... 145 1e-33
>ref|NP_178632.1| unknown protein; protein id: At2g05640.1 [Arabidopsis thaliana]
gi|20197614|gb|AAM15154.1| unknown protein [Arabidopsis
thaliana] gi|20198162|gb|AAM15435.1| unknown protein
[Arabidopsis thaliana]
Length = 1308
Score = 156 bits (395), Expect = 5e-37
Identities = 75/132 (56%), Positives = 101/132 (75%)
Frame = -2
Query: 515 QKFENLCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FP 336
QK+ LCNGTRL V LG VI+A V+TG+N G+ +++PRL + P+D PF+F+RR FP
Sbjct: 1169 QKY-GLCNGTRLQVTQLGDRVIEAKVLTGSNAGNKVYLPRLVLTPADFRIPFRFQRRQFP 1227
Query: 335 ISLCFAMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTN 156
+ CF MTINKSQGQSLSHV +YL RPVF+HGQLYVA+SRV+SR+GLK+L++DEE
Sbjct: 1228 VVPCFGMTINKSQGQSLSHVGIYLPRPVFSHGQLYVAVSRVKSRRGLKILIIDEEGNRGK 1287
Query: 155 TTKTEKYLKIYE 120
TT + ++++
Sbjct: 1288 TTTNVVFKEVFQ 1299
>gb|AAG52315.1|AC021666_4 hypothetical protein, 5' partial; 93859-91015 [Arabidopsis
thaliana]
Length = 729
Score = 149 bits (375), Expect = 9e-35
Identities = 69/127 (54%), Positives = 96/127 (75%)
Frame = -2
Query: 500 LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 321
LCNGTRL + L T +++A VITG IG+ + IP +++ P+D+ PFK RR FP+S+ F
Sbjct: 600 LCNGTRLQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAF 659
Query: 320 AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKTE 141
AMTINKSQGQSL H+ LYL +PVF+HGQLYVALSRV S+KGLK+L+LD++ K+ T
Sbjct: 660 AMTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNV 719
Query: 140 KYLKIYE 120
+ ++++
Sbjct: 720 VFKEVFQ 726
>ref|NP_174828.1| hypothetical protein; protein id: At1g35940.1 [Arabidopsis thaliana]
gi|25511694|pir||D86481 189.6K hypothetical protein
F10O5.11 - Arabidopsis thaliana
gi|12322087|gb|AAG51081.1|AC027032_1 hypothetical protein
[Arabidopsis thaliana]
Length = 1678
Score = 149 bits (375), Expect = 9e-35
Identities = 69/127 (54%), Positives = 96/127 (75%)
Frame = -2
Query: 500 LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 321
LCNGTRL + L T +++A VITG IG+ + IP +++ P+D+ PFK RR FP+S+ F
Sbjct: 1549 LCNGTRLQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMRRRQFPLSVAF 1608
Query: 320 AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKTE 141
AMTINKSQGQSL H+ LYL +PVF+HGQLYVALSRV S+KGLK+L+LD++ K+ T
Sbjct: 1609 AMTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNV 1668
Query: 140 KYLKIYE 120
+ ++++
Sbjct: 1669 VFKEVFQ 1675
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 145 bits (366), Expect = 1e-33
Identities = 68/127 (53%), Positives = 94/127 (73%)
Frame = -2
Query: 500 LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 321
LCNGTRL + L +++++A VITG IG ++IP +++ PSD+ PFK RR FP+S+ F
Sbjct: 1300 LCNGTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAF 1359
Query: 320 AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKTE 141
MTINKSQGQSL V LYL +PVF+HGQLYVALSRV S+ GLK+L+LD+E K+ T
Sbjct: 1360 VMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNV 1419
Query: 140 KYLKIYE 120
+ ++++
Sbjct: 1420 VFKEVFQ 1426
>ref|NP_187933.1| hypothetical protein; protein id: At3g13250.1 [Arabidopsis thaliana]
Length = 1419
Score = 145 bits (366), Expect = 1e-33
Identities = 68/127 (53%), Positives = 94/127 (73%)
Frame = -2
Query: 500 LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 321
LCNGTRL + L +++++A VITG IG ++IP +++ PSD+ PFK RR FP+S+ F
Sbjct: 1291 LCNGTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMRRRQFPLSVAF 1350
Query: 320 AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKTE 141
MTINKSQGQSL V LYL +PVF+HGQLYVALSRV S+ GLK+L+LD+E K+ T
Sbjct: 1351 VMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNV 1410
Query: 140 KYLKIYE 120
+ ++++
Sbjct: 1411 VFKEVFQ 1417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 856,640,031
Number of Sequences: 1393205
Number of extensions: 18049441
Number of successful extensions: 39720
Number of sequences better than 10.0: 257
Number of HSP's better than 10.0 without gapping: 37761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39666
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 62912456556
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
