Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000388A_C04 KMC000388A_c04
(885 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179583.1| hypothetical protein; protein id: At2g19930.1 [... 112 7e-24
ref|NP_179581.1| hypothetical protein; protein id: At2g19910.1 [... 103 3e-21
dbj|BAB56098.1| P0419B01.14 [Oryza sativa (japonica cultivar-gro... 94 3e-18
dbj|BAB56097.1| P0419B01.13 [Oryza sativa (japonica cultivar-gro... 85 1e-15
emb|CAB98158.1| hypothetical protein L1375.04 [Leishmania major] 35 1.5
>ref|NP_179583.1| hypothetical protein; protein id: At2g19930.1 [Arabidopsis thaliana]
gi|25411946|pir||H84582 hypothetical protein At2g19930
[imported] - Arabidopsis thaliana
gi|3687225|gb|AAC62123.1| hypothetical protein
[Arabidopsis thaliana]
Length = 929
Score = 112 bits (280), Expect = 7e-24
Identities = 63/133 (47%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Frame = -1
Query: 885 IRKLPCFDAEIPMDC-MQKWEELYRNYREDMTNALKDPLKANDEADEVIKMYKQKLYGAA 709
I KLPCF+ E + MQK Y NYR +MT A+K ++ A+EVI+ YKQ+ YGAA
Sbjct: 800 ISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKTD--KDESANEVIQRYKQEFYGAA 857
Query: 708 TMEDSPKNISDIYKEALAVYHVTYNFAILCKSVGKCGFAWKVAGSALMSLYTIKPNQ-RT 532
EDS K++ ++Y +ALA+Y + Y++AI V KC F WKVAG L Y K Q +
Sbjct: 858 GFEDSKKSLEELYPQALALYKIVYDYAIHA-GVSKCRFVWKVAGPVLCRFYLNKKMQEKC 916
Query: 531 LTCAPSVLREIFG 493
L CAPSVL+E++G
Sbjct: 917 LVCAPSVLKELWG 929
>ref|NP_179581.1| hypothetical protein; protein id: At2g19910.1 [Arabidopsis thaliana]
gi|25411942|pir||F84582 hypothetical protein At2g19910
[imported] - Arabidopsis thaliana
gi|3687227|gb|AAC62125.1| hypothetical protein
[Arabidopsis thaliana]
Length = 966
Score = 103 bits (257), Expect = 3e-21
Identities = 56/134 (41%), Positives = 82/134 (60%), Gaps = 3/134 (2%)
Frame = -1
Query: 885 IRKLPCFDAE-IPMDCMQKWEELYRNYREDMTNALK--DPLKANDEADEVIKMYKQKLYG 715
I KL F+ E +P M K+ Y NYR +M+ A+ D +K N +EVI+ YKQ YG
Sbjct: 834 ISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYG 893
Query: 714 AATMEDSPKNISDIYKEALAVYHVTYNFAILCKSVGKCGFAWKVAGSALMSLYTIKPNQR 535
AA EDS K++ ++Y +ALA+Y+V Y++AI + V KC FAW VAG L Y K +
Sbjct: 894 AAGFEDSNKSLEELYPQALALYNVVYDYAIQ-EGVAKCTFAWNVAGPVLCKFYLKKTKDK 952
Query: 534 TLTCAPSVLREIFG 493
++ + SVL+++ G
Sbjct: 953 SVVASTSVLKKLLG 966
>dbj|BAB56098.1| P0419B01.14 [Oryza sativa (japonica cultivar-group)]
gi|20160457|dbj|BAB89410.1| B1046G12.8 [Oryza sativa
(japonica cultivar-group)]
Length = 1222
Score = 94.0 bits (232), Expect = 3e-18
Identities = 45/131 (34%), Positives = 71/131 (53%), Gaps = 4/131 (3%)
Frame = -1
Query: 885 IRKLPCF-DAEIPMDCMQKWEELYRNYREDMTNALKDPLKANDEA---DEVIKMYKQKLY 718
I LPCF + ++P Q W+ Y Y D + + ++ E+ + YK LY
Sbjct: 1082 ISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLY 1141
Query: 717 GAATMEDSPKNISDIYKEALAVYHVTYNFAILCKSVGKCGFAWKVAGSALMSLYTIKPNQ 538
GA+ E++P+++ D++ EA A+Y + Y A +V +CGFAWKVAG AL YT+K
Sbjct: 1142 GASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEG 1201
Query: 537 RTLTCAPSVLR 505
+ C+ +LR
Sbjct: 1202 NAVVCSLQLLR 1212
>dbj|BAB56097.1| P0419B01.13 [Oryza sativa (japonica cultivar-group)]
gi|20160456|dbj|BAB89409.1| B1046G12.7 [Oryza sativa
(japonica cultivar-group)]
Length = 1148
Score = 85.1 bits (209), Expect = 1e-15
Identities = 45/130 (34%), Positives = 65/130 (49%), Gaps = 4/130 (3%)
Frame = -1
Query: 876 LPCF-DAEIPMDCMQKWEELYRNYREDMT---NALKDPLKANDEADEVIKMYKQKLYGAA 709
LPCF + E P W+ Y Y D T A+ D + N + E+ + YK LY A+
Sbjct: 1010 LPCFMEREAPPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYEKYKHMLYDAS 1069
Query: 708 TMEDSPKNISDIYKEALAVYHVTYNFAILCKSVGKCGFAWKVAGSALMSLYTIKPNQRTL 529
E + ++ D++ EA +Y + Y A +CGFAWKVAG AL Y +K T
Sbjct: 1070 EFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTA 1129
Query: 528 TCAPSVLREI 499
C+ +LR+I
Sbjct: 1130 LCSLPLLRKI 1139
>emb|CAB98158.1| hypothetical protein L1375.04 [Leishmania major]
Length = 721
Score = 35.0 bits (79), Expect = 1.5
Identities = 29/117 (24%), Positives = 46/117 (38%), Gaps = 2/117 (1%)
Frame = -1
Query: 843 CMQKWEELYRNYREDMTNALKDPLKANDEADEVIKMYKQKLYGAATMEDSPKNISDIYKE 664
CM+ E + R M L A DEADEV + + YG A + + +
Sbjct: 599 CMELLIESHLQQRA-MDRVLARRASARDEADEVSQTLEGNFYGIAAELQTERTL------ 651
Query: 663 ALAVYHVTYNFAILCKSVGKCGFAWKVAGSALMSLYTIKPN--QRTLTCAPSVLREI 499
H Y + +GKC +K + + L N ++T+ CA S R++
Sbjct: 652 -----HTRYTSNAWAQHLGKCKVQYKAEAESALRLLAAAHNKSEKTMECALSDWRQL 703
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,942,540
Number of Sequences: 1393205
Number of extensions: 14936745
Number of successful extensions: 35671
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 34371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35652
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
