Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000387A_C01 KMC000387A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA15938.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 35 0.34
ref|NP_044754.1| NADH dehydrogenase, subunit 1 [Reclinomonas ame... 35 0.58
ref|ZP_00118113.1| hypothetical protein [Cytophaga hutchinsonii] 35 0.58
ref|NP_203339.1| CUN035 putative p91 capsid virion protein, simi... 33 1.7
gb|AAA81668.1| ATPase subunit 6 33 1.7
>gb|EAA15938.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 789
Score = 35.4 bits (80), Expect = 0.34
Identities = 16/64 (25%), Positives = 37/64 (57%)
Frame = +1
Query: 271 NRTTSKIIRNSSKYGHSQGFIDKPS*EKQ*RTVQ*KQTNNNIFDLNTNILQSMIHIFKGS 450
NR T+ I+ NSS Y F + ++ + ++ ++ N+N++D++ ++ ++I K S
Sbjct: 417 NRNTNNIVNNSSNYNK---FSNTYKGSEKYKNIEDQKGNSNLYDISLSLRNRFLNIIKSS 473
Query: 451 KVQD 462
K+ +
Sbjct: 474 KISE 477
>ref|NP_044754.1| NADH dehydrogenase, subunit 1 [Reclinomonas americana]
gi|7431897|pir||S78136 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Reclinomonas americana (ATCC
50394) mitochondrion gi|2258335|gb|AAD11869.1| NADH
dehydrogenase, subunit 1 [Reclinomonas americana]
Length = 333
Score = 34.7 bits (78), Expect = 0.58
Identities = 30/101 (29%), Positives = 45/101 (43%), Gaps = 14/101 (13%)
Frame = -1
Query: 482 NMLLMCPSCTLLPLNMWIMLCNMLVF-----------RSNILLFVCFY-*TVLHCFSYDG 339
NM+LMC CT+L L W+ N+L F + LLFV + + YD
Sbjct: 237 NMILMCSMCTILFLGGWLAPLNILPFTLIPGSIWFGLKVVFLLFVFIWVRATFPRYRYDQ 296
Query: 338 LSIKPCE--CPYLLLFLMIFEVVLLVFEWK*FISSNTSHWL 222
L + P+ L +++ VL+ F+W NT+ WL
Sbjct: 297 LMRLGWKIFLPFSLGWVLFVAGVLVAFDW----VPNTTFWL 333
>ref|ZP_00118113.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 657
Score = 34.7 bits (78), Expect = 0.58
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 365 VLHCFSYD-GLSIKPCECPYLLLFLMIFEVVLLVFEWK*FISSNTSHWLFCIILYSPLRF 189
+L+C Y G+ PC+ Y ++FL IF + + +F + S LFC Y+ F
Sbjct: 2 LLYCVIYSMGIVFSPCKTDYAIIFLKIFMIPIRIFLF-------VSLVLFCFTSYAQNTF 54
Query: 188 RNLGPWNAILVPKC 147
P AI KC
Sbjct: 55 NLKNPGEAI-ATKC 67
>ref|NP_203339.1| CUN035 putative p91 capsid virion protein, similar to AcMNPV ORF83
[Culex nigripalpus baculovirus]
gi|15278291|gb|AAK94113.1|AF403738_35 CUN035 putative
p91 capsid virion protein, similar to AcMNPV ORF83
[Culex nigripalpus baculovirus]
Length = 741
Score = 33.1 bits (74), Expect = 1.7
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -1
Query: 335 SIKPCEC-PYLLLFLMIFEVVLLVFEWK*FISSNTSHWLFCIILYSPLRFRNLGPWNAIL 159
S+ CE P++LL +++F V+L+V NT+ + +R R W++ L
Sbjct: 20 SVSWCEMDPFILLLVVVFVVILVVI-------LNTA-------IPPNIRQRRRAVWDSFL 65
Query: 158 VPKCPGMEPSYFVSFSIV 105
K PG +PS F S +
Sbjct: 66 AGKSPGTDPSTFPVLSYI 83
>gb|AAA81668.1| ATPase subunit 6
Length = 233
Score = 33.1 bits (74), Expect = 1.7
Identities = 22/83 (26%), Positives = 40/83 (47%)
Frame = -1
Query: 437 MWIMLCNMLVFRSNILLFVCFY*TVLHCFSYDGLSIKPCECPYLLLFLMIFEVVLLVFEW 258
+W LC ++ F +L+F + +S+ GL C +LLL+ M+F + L+ +
Sbjct: 22 VWSRLCFVVYFNCLLLIFDFLLFCLFDLYSFIGL------CLFLLLWFMLFNLYSLILYY 75
Query: 257 K*FISSNTSHWLFCIILYSPLRF 189
I+ + LFCI+ + F
Sbjct: 76 --CITYLNLYLLFCIVFLYYMSF 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,894,441
Number of Sequences: 1393205
Number of extensions: 9108183
Number of successful extensions: 20789
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20714
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
