Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000386A_C01 KMC000386A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174433.2| shoot gravitropism 2; protein id: At1g31480.1, ... 70 2e-11
pir||H86440 unknown protein [imported] - Arabidopsis thaliana gi... 70 2e-11
gb|AAG60149.1|AC074360_14 hypothetical protein [Arabidopsis thal... 70 2e-11
dbj|BAC22468.1| contains ESTs C26667(C12802),AU082858(C12802)~un... 36 0.35
ref|NP_791969.1| pyoverdine sidechain peptide synthetase I, epsi... 31 8.6
>ref|NP_174433.2| shoot gravitropism 2; protein id: At1g31480.1, supported by cDNA:
gi_16904658 [Arabidopsis thaliana]
gi|16904659|dbj|BAB71959.1| shoot gravitropism 2
[Arabidopsis thaliana]
Length = 933
Score = 70.1 bits (170), Expect = 2e-11
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 548 DTALFILRHLYRDIPEEPN--LSAVHSGASPKYQSSSAGWYDQR--DSVEEDLPLTFSDK 381
DTALFI++HLYR++P+ PN + SPK S W D+R D +E+LPLTFSDK
Sbjct: 857 DTALFIIKHLYRELPDGPNSPTESTEGDDSPKDSSRPHSWIDRREADYDDEELPLTFSDK 916
Query: 380 AMVRNFSSKTRKILHK 333
+ R+FS++ +K L K
Sbjct: 917 QITRSFSAEAKKYLKK 932
>pir||H86440 unknown protein [imported] - Arabidopsis thaliana
gi|12322534|gb|AAG51263.1|AC027135_4 unknown protein
[Arabidopsis thaliana]
Length = 869
Score = 70.1 bits (170), Expect = 2e-11
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 548 DTALFILRHLYRDIPEEPN--LSAVHSGASPKYQSSSAGWYDQR--DSVEEDLPLTFSDK 381
DTALFI++HLYR++P+ PN + SPK S W D+R D +E+LPLTFSDK
Sbjct: 793 DTALFIIKHLYRELPDGPNSPTESTEGDDSPKDSSRPHSWIDRREADYDDEELPLTFSDK 852
Query: 380 AMVRNFSSKTRKILHK 333
+ R+FS++ +K L K
Sbjct: 853 QITRSFSAEAKKYLKK 868
>gb|AAG60149.1|AC074360_14 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 70.1 bits (170), Expect = 2e-11
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 548 DTALFILRHLYRDIPEEPN--LSAVHSGASPKYQSSSAGWYDQR--DSVEEDLPLTFSDK 381
DTALFI++HLYR++P+ PN + SPK S W D+R D +E+LPLTFSDK
Sbjct: 405 DTALFIIKHLYRELPDGPNSPTESTEGDDSPKDSSRPHSWIDRREADYDDEELPLTFSDK 464
Query: 380 AMVRNFSSKTRKILHK 333
+ R+FS++ +K L K
Sbjct: 465 QITRSFSAEAKKYLKK 480
>dbj|BAC22468.1| contains ESTs C26667(C12802),AU082858(C12802)~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 208
Score = 35.8 bits (81), Expect = 0.35
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -3
Query: 548 DTALFILRHLYRDIPEE 498
DTALFIL+HLY DIPEE
Sbjct: 163 DTALFILKHLYHDIPEE 179
>ref|NP_791969.1| pyoverdine sidechain peptide synthetase I, epsilon-Lys module
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28852591|gb|AAO55664.1| pyoverdine sidechain peptide
synthetase I, epsilon-Lys module [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 1104
Score = 31.2 bits (69), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 56 YPPQCTGMIFLTYVHRKWSNLTFHHSAI 139
YPP C G + R W + TFHH+ +
Sbjct: 690 YPPLCRGAAVVLRDERLWDSATFHHAIV 717
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,741,404
Number of Sequences: 1393205
Number of extensions: 8706350
Number of successful extensions: 17329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17322
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
