Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000381A_C02 KMC000381A_c02
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana] 123 2e-27
ref|NP_566199.2| DEAD/DEAH box helicase carpel factory-related; ... 123 2e-27
gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa (ja... 87 1e-16
ref|NP_171612.1| DEAD/DEAH box helicase carpel factory (CAF); pr... 85 9e-16
gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana] 85 9e-16
>gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
Length = 2042
Score = 123 bits (309), Expect = 2e-27
Identities = 71/144 (49%), Positives = 93/144 (64%)
Frame = -3
Query: 624 HKHITEALENFYRLSSSSTFGWDIDMETPFPKVLGDIIESLAGAILVDSGYNKEAVWQSI 445
HKHI+ + F + S STFGW+ D+ FPKVLGD+IESLAGAI VDSGYNKE V+ SI
Sbjct: 1903 HKHISRTVSEFEQSSLQSTFGWESDIS--FPKVLGDVIESLAGAIFVDSGYNKEVVFASI 1960
Query: 444 RPLLEPLVTPETFKLHPVAELHILCQRRNYTMNKKLYREDGGVLNCIIKVETDDGVIHQH 265
+PLL ++TPET KLHPV EL LCQ+ + ++K +D +K + + H
Sbjct: 1961 KPLLGCMITPETVKLHPVRELTELCQKWQFELSK---AKDFDSFTVEVKAK-EMSFAHTA 2016
Query: 264 KYRGPADRKTAQKLASKEILKSLK 193
K +D+K A+KLA KE+L LK
Sbjct: 2017 K---ASDKKMAKKLAYKEVLNLLK 2037
>ref|NP_566199.2| DEAD/DEAH box helicase carpel factory-related; protein id:
At3g03300.1 [Arabidopsis thaliana]
Length = 1292
Score = 123 bits (309), Expect = 2e-27
Identities = 71/144 (49%), Positives = 93/144 (64%)
Frame = -3
Query: 624 HKHITEALENFYRLSSSSTFGWDIDMETPFPKVLGDIIESLAGAILVDSGYNKEAVWQSI 445
HKHI+ + F + S STFGW+ D+ FPKVLGD+IESLAGAI VDSGYNKE V+ SI
Sbjct: 1153 HKHISRTVSEFEQSSLQSTFGWESDIS--FPKVLGDVIESLAGAIFVDSGYNKEVVFASI 1210
Query: 444 RPLLEPLVTPETFKLHPVAELHILCQRRNYTMNKKLYREDGGVLNCIIKVETDDGVIHQH 265
+PLL ++TPET KLHPV EL LCQ+ + ++K +D +K + + H
Sbjct: 1211 KPLLGCMITPETVKLHPVRELTELCQKWQFELSK---AKDFDSFTVEVKAK-EMSFAHTA 1266
Query: 264 KYRGPADRKTAQKLASKEILKSLK 193
K +D+K A+KLA KE+L LK
Sbjct: 1267 K---ASDKKMAKKLAYKEVLNLLK 1287
>gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa (japonica cultivar-group)]
Length = 1883
Score = 87.4 bits (215), Expect = 1e-16
Identities = 52/115 (45%), Positives = 69/115 (59%)
Frame = -3
Query: 534 PKVLGDIIESLAGAILVDSGYNKEAVWQSIRPLLEPLVTPETFKLHPVAELHILCQRRNY 355
PKVLGDI+ES+AGAI +DSGY+ VW+ +PLL P+VTPET +HPV EL CQ++
Sbjct: 1667 PKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAE 1726
Query: 354 TMNKKLYREDGGVLNCIIKVETDDGVIHQHKYRGPADRKTAQKLASKEILKSLKQ 190
+ K R G + + V DGV Q +K AQKLA++ L LK+
Sbjct: 1727 GLEYKASRA-GNIATVEVFV---DGV--QIGVAQNPQKKMAQKLAARNALVVLKE 1775
>ref|NP_171612.1| DEAD/DEAH box helicase carpel factory (CAF); protein id: At1g01040.1,
supported by cDNA: gi_11559644, supported by cDNA:
gi_6102609 [Arabidopsis thaliana]
gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1
[Arabidopsis thaliana]
gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1
[Arabidopsis thaliana]
Length = 1909
Score = 84.7 bits (208), Expect = 9e-16
Identities = 50/115 (43%), Positives = 69/115 (59%)
Frame = -3
Query: 534 PKVLGDIIESLAGAILVDSGYNKEAVWQSIRPLLEPLVTPETFKLHPVAELHILCQRRNY 355
PKVLGDI+ES+AGAI +DSG + A W+ +PLL+P+VTPET +HPV EL CQ++
Sbjct: 1688 PKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAE 1747
Query: 354 TMNKKLYREDGGVLNCIIKVETDDGVIHQHKYRGPADRKTAQKLASKEILKSLKQ 190
+ K R G + + DGV Q +K AQKLA++ L +LK+
Sbjct: 1748 GLEYKASR-SGNTATVEVFI---DGV--QVGVAQNPQKKMAQKLAARNALAALKE 1796
>gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
Length = 1909
Score = 84.7 bits (208), Expect = 9e-16
Identities = 50/115 (43%), Positives = 69/115 (59%)
Frame = -3
Query: 534 PKVLGDIIESLAGAILVDSGYNKEAVWQSIRPLLEPLVTPETFKLHPVAELHILCQRRNY 355
PKVLGDI+ES+AGAI +DSG + A W+ +PLL+P+VTPET +HPV EL CQ++
Sbjct: 1688 PKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAE 1747
Query: 354 TMNKKLYREDGGVLNCIIKVETDDGVIHQHKYRGPADRKTAQKLASKEILKSLKQ 190
+ K R G + + DGV Q +K AQKLA++ L +LK+
Sbjct: 1748 GLEYKASR-SGNTATVEVFI---DGV--QVGVAQNPQKKMAQKLAARNALAALKE 1796
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,718,163
Number of Sequences: 1393205
Number of extensions: 11511885
Number of successful extensions: 29685
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 28145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29675
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
