Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000380A_C01 KMC000380A_c01
(810 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173499.1| hypothetical protein; protein id: At1g20760.1 [... 118 1e-25
ref|NP_173582.1| unknown protein; protein id: At1g21630.1 [Arabi... 72 7e-12
dbj|BAA85413.1| ESTs AU031435(E61570),AU078245(E61570) correspon... 55 2e-06
ref|NP_013018.1| Suppressor of mutant AC40 subunit of RNA polyme... 35 1.00
gb|AAA35091.1| selected as a weak suppressor of a mutant of the ... 35 1.00
>ref|NP_173499.1| hypothetical protein; protein id: At1g20760.1 [Arabidopsis thaliana]
gi|8886934|gb|AAF80620.1|AC069251_13 F2D10.25
[Arabidopsis thaliana]
Length = 1019
Score = 118 bits (295), Expect = 1e-25
Identities = 63/116 (54%), Positives = 86/116 (73%)
Frame = -1
Query: 783 QPEGLTRFDSLSTRQDFGYNNEKFSRFDSISSSRDFGYNHPERLTRFDSMSSSQDFGFGG 604
QPE L+RFDS+++ +DFG FSRFDSI+SSRD E+ +RFDS++SS+DFG
Sbjct: 913 QPERLSRFDSINSSKDFG--GAAFSRFDSINSSRDV--TGAEKFSRFDSINSSKDFG--- 965
Query: 603 GSQGHARFDSISSSKDFGYNAPFSFDDSDPFGSSGPFKVTSENQSPKKESDNWRAF 436
+RFDS++S+KDF + +SFDD+DPFGS+GPFKV+S+ +SP K SDNW +F
Sbjct: 966 -GPSLSRFDSMNSTKDFSGSHGYSFDDADPFGSTGPFKVSSD-ESPTKRSDNWNSF 1019
>ref|NP_173582.1| unknown protein; protein id: At1g21630.1 [Arabidopsis thaliana]
gi|25518104|pir||C86349 F8K7.4 protein - Arabidopsis
thaliana gi|5263313|gb|AAD41415.1|AC007727_4 Contains
similarity to gb|U07707 epidermal growth factor receptor
substrate (eps15) from Homo sapiens and contains 2
PF|00036 EF hand domains. ESTs gb|T44428 and gb|AA395440
come from this gene. [Arabidopsis thaliana]
Length = 1181
Score = 72.4 bits (176), Expect = 7e-12
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 30/128 (23%)
Frame = -1
Query: 729 YNNEKFSRFDSISSSRDFGYNHPERLTRFDSMSSSQD---------------------FG 613
++N FSRFDS +S+ + ++ L+R DSM S+ +
Sbjct: 1058 FSNNSFSRFDSFNSNNNDAFS----LSRTDSMRSTSEPDPFASRFDSFNYQRYDSFNAQS 1113
Query: 612 FGGGSQGHA---------RFDSISSSKDFGYNAPFSFDDSDPFGSSGPFKVTSENQSPKK 460
+ S +A RFDSI S++D Y+ F FDD DPFGS+GPFK T+ +
Sbjct: 1114 YDSSSNNNASETPKASLTRFDSIGSTRDSDYSHGFGFDDHDPFGSTGPFKTTTTTAETPR 1173
Query: 459 ESDNWRAF 436
SDNW AF
Sbjct: 1174 SSDNWNAF 1181
>dbj|BAA85413.1| ESTs AU031435(E61570),AU078245(E61570) correspond to a region of
the predicted gene.~hypothetical protein [Oryza sativa
(japonica cultivar-group)]
Length = 440
Score = 54.7 bits (130), Expect = 2e-06
Identities = 40/110 (36%), Positives = 54/110 (48%), Gaps = 2/110 (1%)
Frame = -1
Query: 807 SGYSQSPQQPEGLTRFDSLSTRQDFGY--NNEKFSRFDSISSSRDFGYNHPERLTRFDSM 634
SG+S + + +L Q+ G+ +FSRFDSI++S+ E +T FDS
Sbjct: 339 SGFSPKFSESRDDSSSYNLGRSQESGFFPQESRFSRFDSINNSKG------ENVTGFDSP 392
Query: 633 SSSQDFGFGGGSQGHARFDSISSSKDFGYNAPFSFDDSDPFGSSGPFKVT 484
SS +FG RFDS FDD+DPFGSSGPFK +
Sbjct: 393 KSSTNFG---------RFDS--------------FDDADPFGSSGPFKAS 419
>ref|NP_013018.1| Suppressor of mutant AC40 subunit of RNA polymerase I and III (high
serine); Srp40p [Saccharomyces cerevisiae]
gi|548976|sp|P32583|SR40_YEAST SUPPRESSOR PROTEIN SRP40
gi|539364|pir||S38170 SRP40 protein - yeast
(Saccharomyces cerevisiae) gi|450552|emb|CAA51946.1| ORF
YKR412 [Saccharomyces cerevisiae]
gi|486581|emb|CAA82171.1| ORF YKR092c [Saccharomyces
cerevisiae]
Length = 406
Score = 35.4 bits (80), Expect = 1.00
Identities = 29/112 (25%), Positives = 42/112 (36%)
Frame = -1
Query: 783 QPEGLTRFDSLSTRQDFGYNNEKFSRFDSISSSRDFGYNHPERLTRFDSMSSSQDFGFGG 604
+PE + +S S+ +E S DS SSS + E + DS SSS
Sbjct: 147 EPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDS 206
Query: 603 GSQGHARFDSISSSKDFGYNAPFSFDDSDPFGSSGPFKVTSENQSPKKESDN 448
S + SS D ++ S DSD S +S + SD+
Sbjct: 207 SSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDS 258
>gb|AAA35091.1| selected as a weak suppressor of a mutant of the subunit AC40 of
DNA dependant RNA polymerase I and III
Length = 406
Score = 35.4 bits (80), Expect = 1.00
Identities = 29/112 (25%), Positives = 42/112 (36%)
Frame = -1
Query: 783 QPEGLTRFDSLSTRQDFGYNNEKFSRFDSISSSRDFGYNHPERLTRFDSMSSSQDFGFGG 604
+PE + +S S+ +E S DS SSS + E + DS SSS
Sbjct: 147 EPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDS 206
Query: 603 GSQGHARFDSISSSKDFGYNAPFSFDDSDPFGSSGPFKVTSENQSPKKESDN 448
S + SS D ++ S DSD S +S + SD+
Sbjct: 207 SSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDS 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 693,998,553
Number of Sequences: 1393205
Number of extensions: 15392781
Number of successful extensions: 43478
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 40458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43246
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
