Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000379A_C01 KMC000379A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195586.1| hypothetical protein; protein id: At4g38750.1 [... 41 0.011
gb|AAM46049.1|AC122145_3 Hypothetical protein [Oryza sativa (jap... 37 0.16
ref|NP_077921.1| conserved hypothetical [Ureaplasma urealyticum]... 33 1.8
ref|NP_212942.1| B. burgdorferi predicted coding region BB0808 [... 33 3.1
ref|NP_181676.1| hypothetical protein; protein id: At2g41450.1 [... 31 9.0
>ref|NP_195586.1| hypothetical protein; protein id: At4g38750.1 [Arabidopsis thaliana]
gi|7452057|pir||T06074 hypothetical protein T9A14.30 -
Arabidopsis thaliana gi|4490327|emb|CAB38609.1|
hypothetical protein [Arabidopsis thaliana]
gi|7270857|emb|CAB80538.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1073
Score = 40.8 bits (94), Expect = 0.011
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -3
Query: 317 EEAGFVDVAHVPKLSMPEIFHGLQVHPT---SQSCKVYQDIE 201
EE G+VD+AH P+L PEI HGLQ T ++ C Y+ E
Sbjct: 954 EEVGYVDIAHFPELPEPEILHGLQDQATAIVAELCDNYKSKE 995
>gb|AAM46049.1|AC122145_3 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 2025
Score = 37.0 bits (84), Expect = 0.16
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = -3
Query: 317 EEAGFVDVAHVPKLSMPEIFHGLQ 246
EE F+D+AH P+L MP+I HGLQ
Sbjct: 1862 EELEFLDLAHFPELPMPDILHGLQ 1885
>ref|NP_077921.1| conserved hypothetical [Ureaplasma urealyticum]
gi|11345559|pir||B82936 conserved hypothetical UU090
[imported] - Ureaplasma urealyticum
gi|6899043|gb|AAF30496.1|AE002108_9 conserved
hypothetical [Ureaplasma urealyticum]
Length = 584
Score = 33.5 bits (75), Expect = 1.8
Identities = 25/80 (31%), Positives = 36/80 (44%), Gaps = 6/80 (7%)
Frame = -1
Query: 523 KKTYFSLLLFYTCSAPLLRVMNTSGDDQEVGVLEFIR*TSLLTTLSISYGQ------ESW 362
+KT FSL LF + + R S DD E + +F + + LS+ Y E
Sbjct: 423 EKTPFSLTLFSSITLTGNRTFTASKDDIEYWLTKFEKGKNTFIILSLLYPNLKLSQVEFH 482
Query: 361 STDCAPKT*FSDTFVRRLGL 302
C P T F D +++LGL
Sbjct: 483 QDHCHPYTSFDDKNIKKLGL 502
>ref|NP_212942.1| B. burgdorferi predicted coding region BB0808 [Borrelia
burgdorferi] gi|7463411|pir||G70200 hypothetical protein
BB0808 - Lyme disease spirochete
gi|2688753|gb|AAC67159.1| B. burgdorferi predicted
coding region BB0808 [Borrelia burgdorferi B31]
Length = 355
Score = 32.7 bits (73), Expect = 3.1
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = -3
Query: 113 VVRLIIY--LAELSW*HMYVIFSSFITIFFLIYKIHFFV 3
V+ ++I+ LA+L + H+Y+ SSF TIFFLI I+FFV
Sbjct: 314 VISIVIFNFLADLGYLHIYIA-SSFTTIFFLI--INFFV 349
>ref|NP_181676.1| hypothetical protein; protein id: At2g41450.1 [Arabidopsis
thaliana] gi|7452468|pir||T02440 hypothetical protein
At2g41450 [imported] - Arabidopsis thaliana
gi|3241943|gb|AAC23730.1| hypothetical protein
[Arabidopsis thaliana]
Length = 991
Score = 31.2 bits (69), Expect = 9.0
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 541 FFYYLIKKTYFSLLLFYTCSAPLLRVMNTSGDDQEVGVLEF-IR*TSLLTTLSISYGQES 365
F +Y KT+F L+LF + + SG D E+ ++ + ++ +++L L+I + S
Sbjct: 504 FHHYRSLKTFFQLILFVNQFVDFKKPI--SGVDAEMKIVRYLLQNSAILKKLTIRLVKRS 561
Query: 364 WSTDC 350
W +C
Sbjct: 562 WKAEC 566
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,468,749
Number of Sequences: 1393205
Number of extensions: 10109382
Number of successful extensions: 21421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21398
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
