Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000377A_C01 KMC000377A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_670058.1| nicotinate phosphoribosyltransferase [Yersinia ... 34 0.98
ref|NP_405006.1| putative nicotinate phosphoribosyltransferase [... 34 0.98
emb|CAC87485.1| nerve growth factor [Falco sparverius] 31 6.4
pir||T01058 hypothetical protein YUP8H12R.42 - Arabidopsis thali... 31 8.3
dbj|BAB02014.1| emb|CAB16802.1~gene_id:MOB24.20~similar to unkno... 31 8.3
>ref|NP_670058.1| nicotinate phosphoribosyltransferase [Yersinia pestis KIM]
gi|21959646|gb|AAM86309.1|AE013878_6 nicotinate
phosphoribosyltransferase [Yersinia pestis KIM]
Length = 416
Score = 33.9 bits (76), Expect = 0.98
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Frame = +2
Query: 209 LIRLVHSMGIQTHINLRDVLHYLHIPLQDGFRCESDEL-----DNVKTA*ILRWDLMWVM 373
L L+ + + H+ HY HI + FRC SDEL D ++ L L
Sbjct: 24 LTSLLDTDAYKLHMQQAVFHHYRHITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTS 83
Query: 374 ASSIYQAC-----SQHIHY-------KETMSQVVHCKLLGIPVAGIW 478
IY + ++H+ E +S VH L I +AG+W
Sbjct: 84 DEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRIAGLW 130
>ref|NP_405006.1| putative nicotinate phosphoribosyltransferase [Yersinia pestis]
gi|21759351|sp|Q8ZG93|PNCB_YERPE Nicotinate
phosphoribosyltransferase (NAPRTase)
gi|25286937|pir||AG0172 probable nicotinate
phosphoribosyltransferase (EC 2.4.2.11) [imported] -
Yersinia pestis (strain CO92)
gi|15979462|emb|CAC90242.1| putative nicotinate
phosphoribosyltransferase [Yersinia pestis CO92]
Length = 401
Score = 33.9 bits (76), Expect = 0.98
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Frame = +2
Query: 209 LIRLVHSMGIQTHINLRDVLHYLHIPLQDGFRCESDEL-----DNVKTA*ILRWDLMWVM 373
L L+ + + H+ HY HI + FRC SDEL D ++ L L
Sbjct: 9 LTSLLDTDAYKLHMQQAVFHHYRHITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTS 68
Query: 374 ASSIYQAC-----SQHIHY-------KETMSQVVHCKLLGIPVAGIW 478
IY + ++H+ E +S VH L I +AG+W
Sbjct: 69 DEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRIAGLW 115
>emb|CAC87485.1| nerve growth factor [Falco sparverius]
Length = 196
Score = 31.2 bits (69), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +1
Query: 394 LLSTHPLQRNHVPSGSLQTTRHSSCWYLG 480
LL+TH R+H+P + QT+ S W +G
Sbjct: 10 LLNTHRSNRHHIPQAAPQTSHSHSTWTIG 38
>pir||T01058 hypothetical protein YUP8H12R.42 - Arabidopsis thaliana
gi|3152574|gb|AAC17055.1| Strong similarity to lupeol
synthase gb|U49919 from A. thaliana, Landsberg strain.
The cDNA gb|ATU49919 may come from this gene. EST
gb|T22249 and gb|N96338 come from this gene (first gene
in a series of three). [Arabidopsis thaliana]
Length = 830
Score = 30.8 bits (68), Expect = 8.3
Identities = 17/62 (27%), Positives = 30/62 (47%)
Frame = +2
Query: 254 LRDVLHYLHIPLQDGFRCESDELDNVKTA*ILRWDLMWVMASSIYQACSQHIHYKETMSQ 433
+++ ++Y H +QD SD L N + RW L ++ Q +HIHY++ S
Sbjct: 365 MQEDMYYAHPLVQDLL---SDTLQNFVEPLLTRWPLNKLVREKALQLTMKHIHYEDENSH 421
Query: 434 VV 439
+
Sbjct: 422 YI 423
>dbj|BAB02014.1| emb|CAB16802.1~gene_id:MOB24.20~similar to unknown protein
[Arabidopsis thaliana]
Length = 375
Score = 30.8 bits (68), Expect = 8.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 39 MPTQDT*CCHAHA-GNIQL*YRNTRL--CLDNSWHHFKRMLTLRLRRKVNITLVIN*NES 209
MPT +T CCH GN L N C + WHH M R+ +V++ +
Sbjct: 87 MPTDETLCCHEKINGNRSL---NVLFLDCRSHKWHHVTSMRVARVSPEVSVV-----DGK 138
Query: 210 LSVW 221
++VW
Sbjct: 139 INVW 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,707,972
Number of Sequences: 1393205
Number of extensions: 8559833
Number of successful extensions: 18908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18897
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
