>KMC000376A_C05 KMC000376A_c05
AGTACAAATAGATACTAAATAGCATAAAGGAGCAAGGCATATGCATCTTTTACAATGGTG
AATGGTTGAATGCTATTTCAAAGAGAAAATAAAAATCCATGAACAATGACATTTTAAACA
ATGCAGATGAGCATAAAGGGTTAATCTAGATTTTGGCCGATTCATCCGTTTAAACATCTC
TTATTGTGCATATGTCACCATCTAGAACCTCATGTGTAATAAAGAATCAGCACTTGATAA
AACATAGGGCTCGTCCACAGTAAAAATACACATGGTTGATGAGAAGAGGAATAGTCCAAG
ACATGGTTCAGATTTTAACATATGGAAAATAAAGAGTTTGGGCAATGGTGTATGAACACA
AGTCCTGATAAAAGATAAACTTTATCTCATCCATCCGGGATCTGGATTCACTGCATTCAG
TACTCACTGCAGTCACTTGATTCAGCCAGTCTCTCCACCATTTGGTTTATATATCAAAGA
AGGATGACACCCTTGAATCAAAGTTCTGTCCAAAATTCAAGCAGCCCAAAATTCAAACAG
GTAGTTGTGAAATAGAAATAAACCTTCATCATTTCATTTTTATGATCATCGTTTGTTTCT
CATGTGAAAGGAGATCTATAATAACACCTATAATAAAATCTGATAGGAGAAAAAATAAGG
TCAAAGCAGTAAATTAATTTCAGGTTGATTTGAACTTAACTTTTGATCACCTTGATTAAA
AAACTGGTAGAAACAT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000376A_C05 KMC000376A_c05
         (736 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_508531.1| Predicted CDS, C2H2 type zinc finger containing...    35  1.1

>ref|NP_508531.1| Predicted CDS, C2H2 type zinc finger containing protein
           [Caenorhabditis elegans] gi|7500352|pir||T16431
           hypothetical protein F32E4.8 - Caenorhabditis elegans
           gi|2078440|gb|AAB54034.1| Hypothetical protein F52E4.8
           [Caenorhabditis elegans]
          Length = 382

 Score = 35.0 bits (79), Expect = 1.1
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 318 LKSEPCLGLF--LFSSTMCIFTVDEPYVLSSADSLLHMRF*MVTYAQ*EMFKRMNRPKSR 145
           L+ EP   +F  LF+     FT +E  + S    L   R       Q E+ ++   PK+R
Sbjct: 16  LEPEPLETVFQELFAGIKNYFTQEETPIPSKLQILQKRRL-NENRPQTELKEQKTEPKTR 74

Query: 144 LTLYAHLHCLKCHCSWIFIFSLK*HSTIHH 55
              +A L C  C  +++  FSL+ H T++H
Sbjct: 75  SRQFAMLRCGTCSENFVSQFSLEHHETLNH 104

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,213,394
Number of Sequences: 1393205
Number of extensions: 13084883
Number of successful extensions: 24355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24353
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GENLf040d10 BP064456 1 523 2 SPDL056f06_f BP055534 6 521 3 GENLf081h08 BP066781 239 736

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