Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000374A_C01 KMC000374A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567381.1| expressed protein; protein id: At4g11790.1, sup... 96 2e-19
gb|AAM62656.1| unknown [Arabidopsis thaliana] 96 2e-19
pir||T04226 hypothetical protein T5C23.220 - Arabidopsis thalian... 88 6e-17
ref|NP_500709.1| Putative plasma membrane membrane protein, with... 33 1.8
ref|NP_705479.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.1
>ref|NP_567381.1| expressed protein; protein id: At4g11790.1, supported by cDNA:
151415., supported by cDNA: gi_15982859, supported by
cDNA: gi_20334757 [Arabidopsis thaliana]
gi|15982860|gb|AAL09777.1| AT4g11790/T5C23_220
[Arabidopsis thaliana] gi|20334758|gb|AAM16240.1|
AT4g11790/T5C23_220 [Arabidopsis thaliana]
Length = 443
Score = 96.3 bits (238), Expect = 2e-19
Identities = 49/85 (57%), Positives = 67/85 (78%)
Frame = -3
Query: 498 TRESKPTIVVRNEVGKILLHALLYPGIQTNLQKNSVVAIFHTSGNPDGSGGDNDSVVART 319
T+ESKPTI+VRN+VGK+LL+ALLY G++T+ QKN++VAIFH+S + N++V RT
Sbjct: 365 TKESKPTILVRNDVGKLLLNALLYAGMKTSPQKNALVAIFHSSDD------SNENVTPRT 418
Query: 318 FLIRMKTEDDRNKLASTIQEYAPTS 244
FLIR K + R+ LA+ IQEYAP+S
Sbjct: 419 FLIRTKNAEARDNLATAIQEYAPSS 443
>gb|AAM62656.1| unknown [Arabidopsis thaliana]
Length = 443
Score = 96.3 bits (238), Expect = 2e-19
Identities = 49/85 (57%), Positives = 67/85 (78%)
Frame = -3
Query: 498 TRESKPTIVVRNEVGKILLHALLYPGIQTNLQKNSVVAIFHTSGNPDGSGGDNDSVVART 319
T+ESKPTI+VRN+VGK+LL+ALLY G++T+ QKN++VAIFH+S + N++V RT
Sbjct: 365 TKESKPTILVRNDVGKLLLNALLYAGMKTSPQKNALVAIFHSSDD------SNENVTPRT 418
Query: 318 FLIRMKTEDDRNKLASTIQEYAPTS 244
FLIR K + R+ LA+ IQEYAP+S
Sbjct: 419 FLIRTKNAEARDNLATAIQEYAPSS 443
>pir||T04226 hypothetical protein T5C23.220 - Arabidopsis thaliana
gi|4539470|emb|CAB39950.1| hypothetical protein
[Arabidopsis thaliana] gi|7267879|emb|CAB78222.1|
hypothetical protein [Arabidopsis thaliana]
Length = 457
Score = 87.8 bits (216), Expect = 6e-17
Identities = 49/96 (51%), Positives = 67/96 (69%), Gaps = 11/96 (11%)
Frame = -3
Query: 498 TRESKPTIVVRNE-----------VGKILLHALLYPGIQTNLQKNSVVAIFHTSGNPDGS 352
T+ESKPTI+VRN+ VGK+LL+ALLY G++T+ QKN++VAIFH+S +
Sbjct: 368 TKESKPTILVRNDISNIMNPFSCQVGKLLLNALLYAGMKTSPQKNALVAIFHSSDD---- 423
Query: 351 GGDNDSVVARTFLIRMKTEDDRNKLASTIQEYAPTS 244
N++V RTFLIR K + R+ LA+ IQEYAP+S
Sbjct: 424 --SNENVTPRTFLIRTKNAEARDNLATAIQEYAPSS 457
>ref|NP_500709.1| Putative plasma membrane membrane protein, with at least 6
transmembrane domains, nematode specific [Caenorhabditis
elegans] gi|7495726|pir||T15471 hypothetical protein
C09B9.1 - Caenorhabditis elegans
gi|1208865|gb|AAB37557.1| Hypothetical protein C09B9.1
[Caenorhabditis elegans]
Length = 355
Score = 33.1 bits (74), Expect = 1.8
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 5/65 (7%)
Frame = -1
Query: 281 NWLQLFKNMLQHLESTRVMIIVPP*AFKCKRIL----DRIPIFPFQKICIFL-VAIFQMC 117
NW + F ++ S M+++P + C RI DRI +FP IC+ L + F +C
Sbjct: 124 NWTKAFVGIINDYVSINTMVLLPMLLY-CGRIATLPGDRINVFPTNMICLILQIVPFFIC 182
Query: 116 CQTFV 102
+V
Sbjct: 183 ILNYV 187
>ref|NP_705479.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615724|emb|CAD52716.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2049
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 155 KICIFLVAIFQMCCQTFVFRGCC-LCIVREECGWLLDFGRL 36
K CI+LVA F+ C Q + GC + I++EECG + G L
Sbjct: 1952 KCCIYLVAPFE-CVQKLLADGCKRMAIIKEECGADVRLGNL 1991
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,868,899
Number of Sequences: 1393205
Number of extensions: 10148753
Number of successful extensions: 30635
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 28763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30308
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
