Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000373A_C01 KMC000373A_c01
(884 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P10322|NO25_MEDSA Nodulin 25 precursor (N-25) gi|72284|pir||Z... 39 0.080
pir||ZZAACD nodulin-25 precursor (clone 910) - alfalfa (cv. Card... 39 0.080
ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas a... 38 0.23
emb|CAA31645.1| nodulin-25 (partial) [Medicago sativa] 35 1.2
pir||S18503 nodulin-25 (clone 386) - alfalfa (cv. Cardinal) (fra... 35 1.2
>sp|P10322|NO25_MEDSA Nodulin 25 precursor (N-25) gi|72284|pir||ZZAAGY nodulin-25
precursor (clone pBRC4,pBRC5) - alfalfa (cv.
Nagyszenasi) gi|19643|emb|CAA31644.1| nodulin-25 protein
[Medicago sativa]
Length = 246
Score = 39.3 bits (90), Expect = 0.080
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +3
Query: 249 VEGEGEEFDVIPNVKPSGVDWKAFPAAAYPWLKKDGAKTKTVPGNGNRRLL 401
+ E+ + IP+V S VDW+ F A YPW+KKDG T T G+R+LL
Sbjct: 197 ISSGAEKENFIPSV--SQVDWRTFHAK-YPWIKKDGPNTVT----GSRKLL 240
>pir||ZZAACD nodulin-25 precursor (clone 910) - alfalfa (cv. Cardinal)
gi|19646|emb|CAA31646.1| nodulin-25 [Medicago sativa]
Length = 246
Score = 39.3 bits (90), Expect = 0.080
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +3
Query: 249 VEGEGEEFDVIPNVKPSGVDWKAFPAAAYPWLKKDGAKTKTVPGNGNRRLL 401
+ E+ + IP+V S VDW+ F A YPW+KKDG T T G+R+LL
Sbjct: 197 ISSGAEKENFIPSV--SQVDWRTFHAK-YPWIKKDGPNTVT----GSRKLL 240
>ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA01]
gi|11348413|pir||E83062 deoxyribodipyrimidine photolyase
PA4660 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9950915|gb|AAG08047.1|AE004880_3
deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PAO1]
Length = 481
Score = 37.7 bits (86), Expect = 0.23
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 7/59 (11%)
Frame = -3
Query: 309 NQLLKASH*ELHQI-------PHPLPPHSLADEQFELGEPSR*PSFPAPSYSLGNVWPS 154
+Q K H L+Q P P PPH+LA + P P+FP P+ SL +WP+
Sbjct: 155 SQFRKVCHERLYQALPGVRPRPQPQPPHALASDPL----PDAVPAFPRPADSLRRLWPA 209
>emb|CAA31645.1| nodulin-25 (partial) [Medicago sativa]
Length = 195
Score = 35.4 bits (80), Expect = 1.2
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 249 VEGEGEEFDVIPNVKPSGVDWKAFPAAAYPWLKKDGAKTKTVPGNGNRRLL 401
+ E+ + IP+V S VDW+ F A Y W+KKDG T T G+R+LL
Sbjct: 146 ISSGAEKENFIPSV--SQVDWRTFHAK-YLWIKKDGPNTVT----GSRKLL 189
>pir||S18503 nodulin-25 (clone 386) - alfalfa (cv. Cardinal) (fragment)
Length = 195
Score = 35.4 bits (80), Expect = 1.2
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 249 VEGEGEEFDVIPNVKPSGVDWKAFPAAAYPWLKKDGAKTKTVPGNGNRRLL 401
+ E+ + IP+V S VDW+ F A Y W+KKDG T T G+R+LL
Sbjct: 146 ISSGAEKENFIPSV--SQVDWRTFHAK-YLWIKKDGPNTVT----GSRKLL 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 770,713,596
Number of Sequences: 1393205
Number of extensions: 16903302
Number of successful extensions: 38766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 37254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38750
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
