Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000369A_C02 KMC000369A_c02
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09481.1| contains similarity to transcription regulator~g... 233 1e-60
gb|AAK43900.1|AF370523_1 Unknown protein [Arabidopsis thaliana] ... 233 1e-60
ref|NP_568361.1| putative protein; protein id: At5g18230.1, supp... 233 1e-60
gb|AAO51497.1| similar to Mus musculus (Mouse). similar to CCR4... 163 2e-39
ref|NP_610176.1| CG8426-PA [Drosophila melanogaster] gi|17862192... 149 2e-35
>dbj|BAB09481.1| contains similarity to transcription regulator~gene_id:MRG7.19
[Arabidopsis thaliana]
Length = 889
Score = 233 bits (594), Expect = 1e-60
Identities = 102/138 (73%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Frame = -2
Query: 605 DSERPRTYTPRHPTITPPTYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQ 426
DSERPR Y+PR+P ITP T+PQ QAPI+NNP WE++G + +GTDTLFFAFYYQQN+YQQ
Sbjct: 752 DSERPRPYSPRNPAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQ 811
Query: 425 YLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQH-GWCQR 249
YLAA+ELKKQSWRYHRK++TWFQRH+EPK+ATDE+E+G YVYFDF D+ Q GWCQR
Sbjct: 812 YLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQR 871
Query: 248 IKTGFTFEYNYLEDELVV 195
IK FTFEY+YLEDELVV
Sbjct: 872 IKNEFTFEYSYLEDELVV 889
>gb|AAK43900.1|AF370523_1 Unknown protein [Arabidopsis thaliana] gi|25084156|gb|AAN72188.1|
Unknown protein [Arabidopsis thaliana]
Length = 843
Score = 233 bits (594), Expect = 1e-60
Identities = 102/138 (73%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Frame = -2
Query: 605 DSERPRTYTPRHPTITPPTYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQ 426
DSERPR Y+PR+P ITP T+PQ QAPI+NNP WE++G + +GTDTLFFAFYYQQN+YQQ
Sbjct: 706 DSERPRPYSPRNPAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQ 765
Query: 425 YLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQH-GWCQR 249
YLAA+ELKKQSWRYHRK++TWFQRH+EPK+ATDE+E+G YVYFDF D+ Q GWCQR
Sbjct: 766 YLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQR 825
Query: 248 IKTGFTFEYNYLEDELVV 195
IK FTFEY+YLEDELVV
Sbjct: 826 IKNEFTFEYSYLEDELVV 843
>ref|NP_568361.1| putative protein; protein id: At5g18230.1, supported by cDNA:
gi_13877644 [Arabidopsis thaliana]
Length = 843
Score = 233 bits (594), Expect = 1e-60
Identities = 102/138 (73%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Frame = -2
Query: 605 DSERPRTYTPRHPTITPPTYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQ 426
DSERPR Y+PR+P ITP T+PQ QAPI+NNP WE++G + +GTDTLFFAFYYQQN+YQQ
Sbjct: 706 DSERPRPYSPRNPAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQ 765
Query: 425 YLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQH-GWCQR 249
YLAA+ELKKQSWRYHRK++TWFQRH+EPK+ATDE+E+G YVYFDF D+ Q GWCQR
Sbjct: 766 YLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQR 825
Query: 248 IKTGFTFEYNYLEDELVV 195
IK FTFEY+YLEDELVV
Sbjct: 826 IKNEFTFEYSYLEDELVV 843
>gb|AAO51497.1| similar to Mus musculus (Mouse). similar to CCR4-NOT transcription
complex, subunit 3 [Dictyostelium discoideum]
Length = 1015
Score = 163 bits (412), Expect = 2e-39
Identities = 78/134 (58%), Positives = 93/134 (69%)
Frame = -2
Query: 608 KDSERPRTYTPRHPTITPPTYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQ 429
KD ER T+ PR+P P YPQ P+ +P +EK F DTLFF FY++Q TYQ
Sbjct: 734 KDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK-----FDIDTLFFIFYFKQGTYQ 788
Query: 428 QYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQHGWCQR 249
QY AA+ELKKQ WRYH+KY TWF+RHEEPK T+EFE+GTYVYFD+ + GWCQR
Sbjct: 789 QYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQGTYVYFDY-------ETGWCQR 841
Query: 248 IKTGFTFEYNYLED 207
KT FTFEY +LED
Sbjct: 842 KKTEFTFEYRFLED 855
>ref|NP_610176.1| CG8426-PA [Drosophila melanogaster] gi|17862192|gb|AAL39573.1|
LD13864p [Drosophila melanogaster]
gi|21626820|gb|AAF57324.2| CG8426-PA [Drosophila
melanogaster]
Length = 844
Score = 149 bits (377), Expect = 2e-35
Identities = 69/134 (51%), Positives = 90/134 (66%)
Frame = -2
Query: 605 DSERPRTYTPRHPTITPPTYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQ 426
D+E+ +TY R P +TP YPQ Q PI + F++++ T+TLFF FYY + + Q
Sbjct: 721 DTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS-----TETLFFVFYYMEGSKAQ 775
Query: 425 YLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQHGWCQRI 246
YLAA+ LKKQSWR+H KY WFQRHEEPK+ D++E+GTY+YFD+ W QR
Sbjct: 776 YLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYIYFDY--------EKWSQRK 827
Query: 245 KTGFTFEYNYLEDE 204
K GFTFEY YLED+
Sbjct: 828 KEGFTFEYKYLEDK 841
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,976,783
Number of Sequences: 1393205
Number of extensions: 11817907
Number of successful extensions: 46955
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 40672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46876
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
