>KMC000367A_C01 KMC000367A_c01
aacaaaactcgataaaatcaaacaataaacttAACAATCCAAAGCAAAGTGTGTTACTAT
GAAATTAATTCAAGGTAATCCAGGGGGCAACACATTAATGTAAGCTACTTGGCAATCAAA
ATTAAAGATGAAAAACATAACAAAATCTGATAGAAGTTTTTCTTTTCTAGGGGGTCTTCA
GAACCATTGCAAACTACAAAAGAGGCCTCCAAGGAAGAGCTTCACTTGAGAGGAATAAAC
CTGGAAGAGTGAGTAGCACCAATACCAGGCCTACCGTGCTTAACAGGCTTGTATGAAATA
GAGAACTCAGCAAGGTAATGGCCAATCATCTCAGGTTTGATCTCAACCTGGTTGAAAGTC
TTTCCATTGTACACCCCGATAATGCTGCCAATCATCTCTGGCACAATAATCATGTTCCTG
AGGTGGGTGCGCACTGGTTCTGGCTTCTCACCAGCTGGTGCCTCCCTTTTCGCTTTGCGA
AGCTTCTTAATCAAGGCCATGGGCTTCCTGGTGAGAACTCTCTGGAACCTTCTGCGAGCA
CGGGCACTGAAGAGCTTGACAAGCTCATCAGTGGACATGT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000367A_C01 KMC000367A_c01
         (580 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL32040.1|AF439281_1 ribosomal S15 protein [Retama raetam]        230  8e-60
ref|NP_196513.1| ribosomal protein S15-like; protein id: At5g095...   227  9e-59
ref|NP_171923.1| putative 40S ribosomal protein S15; protein id:...   225  4e-58
sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 gi|15425963|gb|AA...   224  5e-58
dbj|BAC24881.1| putative 40S ribosomal protein S15 [Oryza sativa...   224  8e-58

>gb|AAL32040.1|AF439281_1 ribosomal S15 protein [Retama raetam]
          Length = 139

 Score =  230 bits (587), Expect = 8e-60
 Identities = 115/118 (97%), Positives = 116/118 (97%)
 Frame = -3

Query: 578 MSTDELVKLFSARARRRFQRVLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 399
           MSTD+LVKLFSARARRRFQR LTRKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct: 22  MSTDDLVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVP 81

Query: 398 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 225
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 82  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 139

>ref|NP_196513.1| ribosomal protein S15-like; protein id: At5g09510.1, supported by
           cDNA: 164., supported by cDNA: gi_15293064, supported by
           cDNA: gi_20147170, supported by cDNA: gi_20465566
           [Arabidopsis thaliana] gi|27923838|sp|Q9FY64|R15D_ARATH
           40S ribosomal protein S15-4 gi|9955538|emb|CAC05477.1|
           ribosomal protein S15-like [Arabidopsis thaliana]
           gi|15293065|gb|AAK93643.1| putative ribosomal protein
           S15 [Arabidopsis thaliana] gi|20465567|gb|AAM20266.1|
           putative ribosomal protein S15 [Arabidopsis thaliana]
           gi|21553758|gb|AAM62851.1| ribosomal protein S15-like
           [Arabidopsis thaliana]
          Length = 152

 Score =  227 bits (578), Expect = 9e-59
 Identities = 112/118 (94%), Positives = 115/118 (96%)
 Frame = -3

Query: 578 MSTDELVKLFSARARRRFQRVLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 399
           MSTD+LVKLFS+R RRRF R LTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP
Sbjct: 35  MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 94

Query: 398 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 225
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

>ref|NP_171923.1| putative 40S ribosomal protein S15; protein id: At1g04270.1,
           supported by cDNA: gi_15081657, supported by cDNA:
           gi_313151 [Arabidopsis thaliana]
           gi|730645|sp|Q08112|R15A_ARATH 40S ribosomal protein
           S15-1 gi|629556|pir||S43412 ribosomal protein S15 -
           Arabidopsis thaliana gi|313152|emb|CAA80679.1| ribosomal
           protein S15 [Arabidopsis thaliana]
           gi|313188|emb|CAA80681.1| ribosomal protein S15
           [Arabidopsis thaliana] gi|1903366|gb|AAB70449.1| Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene. [Arabidopsis
           thaliana] gi|15081658|gb|AAK82484.1| At1g04270/F19P19_29
           [Arabidopsis thaliana] gi|20147171|gb|AAM10302.1|
           At1g04270/F19P19_29 [Arabidopsis thaliana]
          Length = 152

 Score =  225 bits (573), Expect = 4e-58
 Identities = 111/118 (94%), Positives = 114/118 (96%)
 Frame = -3

Query: 578 MSTDELVKLFSARARRRFQRVLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 399
           MSTD+LVKLFS+R RRRF R LTRKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct: 35  MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVP 94

Query: 398 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 225
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 gi|15425963|gb|AAK97632.1| 40S ribosomal
           protein S15 [Elaeis oleifera]
          Length = 153

 Score =  224 bits (572), Expect = 5e-58
 Identities = 112/118 (94%), Positives = 113/118 (94%)
 Frame = -3

Query: 578 MSTDELVKLFSARARRRFQRVLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 399
           M TDELVKLF ARARRRFQR L RKPMALIKKLRKAKR+AP GEKPEPVRTHLRNMIIVP
Sbjct: 36  MGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVP 95

Query: 398 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 225
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 96  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

>dbj|BAC24881.1| putative 40S ribosomal protein S15 [Oryza sativa (japonica
           cultivar-group)]
          Length = 222

 Score =  224 bits (570), Expect = 8e-58
 Identities = 110/118 (93%), Positives = 115/118 (97%)
 Frame = -3

Query: 578 MSTDELVKLFSARARRRFQRVLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 399
           MSTD+LV+LF ARARRRFQR L RKPMALIKKLRKAK++APAGEKPEPVRTHLRNMIIVP
Sbjct: 105 MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP 164

Query: 398 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 225
           EMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 165 EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 222

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,388,783
Number of Sequences: 1393205
Number of extensions: 10814119
Number of successful extensions: 32310
Number of sequences better than 10.0: 282
Number of HSP's better than 10.0 without gapping: 31354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32255
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFBL035g06_f BP043033 1 512 2 GENLf087f11 BP067104 29 471 3 MWM123d04_f AV766697 33 397 4 GENLf081f04 BP066764 33 522 5 GENLf059a07 BP065484 33 542 6 GENLf014a09 BP063061 33 590 7 SPD095b08_f BP051572 36 547

---