Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000365A_C01 KMC000365A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40554|IF3A_TOBAC Eukaryotic translation initiation factor 3 ... 88 1e-16
dbj|BAB07943.1| putative eukaryotic translation initiation facto... 65 1e-09
ref|NP_192881.1| putative protein; protein id: At4g11420.1, supp... 64 1e-09
sp|Q9XHR2|IF3A_MAIZE Eukaryotic translation initiation factor 3 ... 64 3e-09
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA... 42 0.006
>sp|Q40554|IF3A_TOBAC Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(Eukaryotic translation initiation factor 3 large
subunit) (eIF3a) (PNLA-35) gi|629692|pir||S47179
hypothetical protein - common tobacco
gi|506471|emb|CAA56189.1| unnamed protein product
[Nicotiana tabacum]
Length = 958
Score = 88.2 bits (217), Expect = 1e-16
Identities = 53/120 (44%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Frame = -3
Query: 682 ELEEKEXQRKEALLARPTEPVLKPAEPPA--RPLE-------SAPAAAAAVANPGRYVPR 530
ELEEKE + +E +L + T + KPAEPP RP E A AA A PG+YVP+
Sbjct: 845 ELEEKEKREREEILRKSTAVLPKPAEPPTLGRPAELGGAAPIPAAAATAPTPGPGKYVPK 904
Query: 529 HRRQGGEPAAAAAAAPPPPETDRWNNSSSRPDGDRWRSEDRRTSFGSGAPKSSTTWSSSR 350
H R + A A PPPETD+W S D WR E + SFGSG S T+W +SR
Sbjct: 905 HLRTKMDGAGQA----PPPETDKWGGGSKPDDRPSWRDERKPPSFGSG---SRTSWPASR 957
>dbj|BAB07943.1| putative eukaryotic translation initiation factor 3 large subunit
[Oryza sativa (japonica cultivar-group)]
Length = 984
Score = 64.7 bits (156), Expect = 1e-09
Identities = 55/142 (38%), Positives = 67/142 (46%), Gaps = 30/142 (21%)
Frame = -3
Query: 682 ELEEK-EXQRKEALLAR---PTEPVLKP-AEPPARPLE--SAPAAAAAVANP--GRYVPR 530
ELEEK E QR EAL+ R EP P A P A+P + +APAAAAA A P G+YVP+
Sbjct: 844 ELEEKKEKQRMEALMGRGAGAAEPARTPDAAPVAQPAQPVAAPAAAAAAAAPAAGKYVPK 903
Query: 529 HRRQGGEPAAAAAAAPP--PPETDRWNNSSSRPDGDRWRSEDRRTSFGSGAP-------- 380
+R GG+ ++A P PE DRW + RP D AP
Sbjct: 904 FKR-GGDGGSSAGGQRPAVAPEQDRWGSRDDRPRPDMRPLRQEAPPARDAAPPARQDGPP 962
Query: 379 -----------KSSTTWSSSRN 347
SS+TWSS RN
Sbjct: 963 GTWRPSRYSSSSSSSTWSSRRN 984
>ref|NP_192881.1| putative protein; protein id: At4g11420.1, supported by cDNA:
gi_12407748 [Arabidopsis thaliana]
gi|23396624|sp|Q9LD55|IF3A_ARATH Eukaryotic translation
initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic
translation initiation factor 3 large subunit) (eIF3a)
(p114) gi|7486118|pir||T10562 hypothetical protein
F25E4.40 - Arabidopsis thaliana
gi|7267841|emb|CAB81243.1| putative protein [Arabidopsis
thaliana] gi|7321039|emb|CAB82147.1| putative protein
[Arabidopsis thaliana]
gi|12407749|gb|AAG53635.1|AF291711_1 initiation factor 3a
[Arabidopsis thaliana]
Length = 987
Score = 64.3 bits (155), Expect = 1e-09
Identities = 44/116 (37%), Positives = 59/116 (49%), Gaps = 3/116 (2%)
Frame = -3
Query: 682 ELEEKEXQRKEALLARPTEPVLKPAEPPARPL-ESAPAAAAAVAN--PGRYVPRHRRQGG 512
ELEEK + +E LL P + AEP P+ +APAAAAA A YVP+ +RQ
Sbjct: 846 ELEEKSRREREELLRGTNAPPARLAEPTVTPVGTTAPAAAAAAAGAPAAPYVPKWKRQTT 905
Query: 511 EPAAAAAAAPPPPETDRWNNSSSRPDGDRWRSEDRRTSFGSGAPKSSTTWSSSRNR 344
E + +AP ETDR +N P D W S GA +++ W+S+R R
Sbjct: 906 E--VSGPSAPTSSETDRRSNRGPPPGDDHWGS-------NRGAAQNTDRWTSNRER 952
>sp|Q9XHR2|IF3A_MAIZE Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(Eukaryotic translation initiation factor 3 large
subunit) (eIF3a) gi|5106764|gb|AAD39834.1|AF073329_1
eukaryotic translation initiation factor 3 large subunit
[Zea mays]
Length = 962
Score = 63.5 bits (153), Expect = 3e-09
Identities = 47/132 (35%), Positives = 66/132 (49%), Gaps = 20/132 (15%)
Frame = -3
Query: 682 ELEEKEXQRKEALLARPTEPVLKP-----AEPPARPLESAPAAAAAVANPGRYVPRHRRQ 518
ELEEK +E LL + +E V P A+PP +A AAAAA P +Y+P+ +R
Sbjct: 840 ELEEKAKATREKLL-KGSEAVRAPDSAPVAQPPRESAAAAAAAAAAAPAPSKYIPKFKR- 897
Query: 517 GGEPAAAAAAAPPPPETDRWNN---------------SSSRPDGDRWRSEDRRTSFGSGA 383
GG+ ++ + + + DRW + SSR D DRWR + F S +
Sbjct: 898 GGDSSSIPSGS---RDEDRWGSRGPLRQDGPPARLDAPSSRQDTDRWRG----SRFPSNS 950
Query: 382 PKSSTTWSSSRN 347
SS+TWS SRN
Sbjct: 951 TSSSSTWSRSRN 962
>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
extensin [Volvox carteri]
Length = 464
Score = 42.4 bits (98), Expect = 0.006
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = -3
Query: 631 TEPVLKPAEPPARPLESAPAAAAAVANPGRYVPRHRRQGGEPAAAAAAAPPPPETD 464
+ P P PP P S P A A ANP P R GG P PPPPE D
Sbjct: 381 SSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGG-PPLGTRPPPPPPEDD 435
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 650,635,508
Number of Sequences: 1393205
Number of extensions: 16756689
Number of successful extensions: 101623
Number of sequences better than 10.0: 749
Number of HSP's better than 10.0 without gapping: 74404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95794
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
