Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000364A_C01 KMC000364A_c01
(1022 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191905.2| conserved hypothetical protein; protein id: At3... 503 e-141
pir||T49187 hypothetical protein MAA21.90 - Arabidopsis thaliana... 503 e-141
pir||B86322 F6A14.8 protein - Arabidopsis thaliana gi|6730704|gb... 358 1e-97
ref|NP_173317.1| hypothetical protein; protein id: At1g18830.1 [... 358 1e-97
dbj|BAB47154.1| Sec31p [Oryza sativa] 291 1e-77
>ref|NP_191905.2| conserved hypothetical protein; protein id: At3g63460.1, supported by
cDNA: gi_20466471 [Arabidopsis thaliana]
gi|20466472|gb|AAM20553.1| putative protein [Arabidopsis
thaliana]
Length = 1104
Score = 503 bits (1294), Expect = e-141
Identities = 237/297 (79%), Positives = 272/297 (90%), Gaps = 1/297 (0%)
Frame = +2
Query: 134 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDPELPLVAE 313
MACIKGV RSASVALAPDAPY+AAGTMAGAVDLSFSSSANLEIFKLDFQSDD +LPLV E
Sbjct: 1 MACIKGVGRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDRDLPLVGE 60
Query: 314 YPSSDRFNRLSWGKGGSGSDGFSLGLVAGGLVDGNIDIWNPLSLIRSE-NESALVGHLVR 490
PSS+RFNRL+WG+ GSGS+ F+LGL+AGGLVDGNID+WNPLSLI S+ +E+ALVGHL
Sbjct: 61 IPSSERFNRLAWGRNGSGSEEFALGLIAGGLVDGNIDLWNPLSLIGSQPSENALVGHLSV 120
Query: 491 HKGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFPPLKGSGSASQGEISFLSW 670
HKGPVRGLEFN I+ NLLASGA+DGEICIWDL PSEP+HFP LKGSGSA+QGEISF+SW
Sbjct: 121 HKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSHFPLLKGSGSATQGEISFISW 180
Query: 671 NSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDIATQLVVASDEDG 850
N KVQ ILASTSYNGTTV+WDL+KQKP+I+FADSVRRRCSVLQWNP++ TQ++VASD+D
Sbjct: 181 NRKVQQILASTSYNGTTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDS 240
Query: 851 SPSLRLWDMRNIITPIKEFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDTISGE 1021
SP+L+LWDMRNI++P++EF GH RGVIAM WCP+DSSYLLTC KD+RTICWDT + E
Sbjct: 241 SPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAE 297
>pir||T49187 hypothetical protein MAA21.90 - Arabidopsis thaliana
gi|7573329|emb|CAB87799.1| putative protein [Arabidopsis
thaliana]
Length = 1097
Score = 503 bits (1294), Expect = e-141
Identities = 237/297 (79%), Positives = 272/297 (90%), Gaps = 1/297 (0%)
Frame = +2
Query: 134 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDPELPLVAE 313
MACIKGV RSASVALAPDAPY+AAGTMAGAVDLSFSSSANLEIFKLDFQSDD +LPLV E
Sbjct: 1 MACIKGVGRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDRDLPLVGE 60
Query: 314 YPSSDRFNRLSWGKGGSGSDGFSLGLVAGGLVDGNIDIWNPLSLIRSE-NESALVGHLVR 490
PSS+RFNRL+WG+ GSGS+ F+LGL+AGGLVDGNID+WNPLSLI S+ +E+ALVGHL
Sbjct: 61 IPSSERFNRLAWGRNGSGSEEFALGLIAGGLVDGNIDLWNPLSLIGSQPSENALVGHLSV 120
Query: 491 HKGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFPPLKGSGSASQGEISFLSW 670
HKGPVRGLEFN I+ NLLASGA+DGEICIWDL PSEP+HFP LKGSGSA+QGEISF+SW
Sbjct: 121 HKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSHFPLLKGSGSATQGEISFISW 180
Query: 671 NSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDIATQLVVASDEDG 850
N KVQ ILASTSYNGTTV+WDL+KQKP+I+FADSVRRRCSVLQWNP++ TQ++VASD+D
Sbjct: 181 NRKVQQILASTSYNGTTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDS 240
Query: 851 SPSLRLWDMRNIITPIKEFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDTISGE 1021
SP+L+LWDMRNI++P++EF GH RGVIAM WCP+DSSYLLTC KD+RTICWDT + E
Sbjct: 241 SPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAE 297
>pir||B86322 F6A14.8 protein - Arabidopsis thaliana
gi|6730704|gb|AAF27099.1|AC011809_8 Similar to
WEB1/SEC31-like protein transport protein [Arabidopsis
thaliana]
Length = 874
Score = 358 bits (918), Expect = 1e-97
Identities = 182/296 (61%), Positives = 223/296 (74%)
Frame = +2
Query: 134 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDPELPLVAE 313
M CIK + RSA VA+AP++P++AAGTMAGAVDLSFSSSANLEIF+LDFQS+D EL LV +
Sbjct: 1 MDCIKSIGRSAFVAIAPESPFIAAGTMAGAVDLSFSSSANLEIFELDFQSNDRELKLVGQ 60
Query: 314 YPSSDRFNRLSWGKGGSGSDGFSLGLVAGGLVDGNIDIWNPLSLIRSENESALVGHLVRH 493
SS+RFNRL+WG GSGSD GL+AGGLVDGNI +WNP+S E A V L +H
Sbjct: 61 CQSSERFNRLAWGSYGSGSD----GLIAGGLVDGNIGLWNPIS--SESGEIAHVRDLSKH 114
Query: 494 KGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFPPLKGSGSASQGEISFLSWN 673
KGPVRGLEFN +PN LASGA+DG +CIWDLANPS+P+H+ LKG+GS Q EIS LSWN
Sbjct: 115 KGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPSKPSHY--LKGTGSYMQSEISSLSWN 172
Query: 674 SKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDIATQLVVASDEDGS 853
QH+LASTS+NGTTV+WD+ +K + +V RCSVLQW+PD Q++VASDED S
Sbjct: 173 KGFQHVLASTSHNGTTVIWDVNNEKIITDLKTTV--RCSVLQWDPDHFNQILVASDEDSS 230
Query: 854 PSLRLWDMRNIITPIKEFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDTISGE 1021
P+++ D +T GVIAM WCP+DS YLLTCGKD+RTICW+T +G+
Sbjct: 231 PNVKSGD-----------TCYTTGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGK 275
>ref|NP_173317.1| hypothetical protein; protein id: At1g18830.1 [Arabidopsis thaliana]
Length = 911
Score = 358 bits (918), Expect = 1e-97
Identities = 182/296 (61%), Positives = 223/296 (74%)
Frame = +2
Query: 134 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDPELPLVAE 313
M CIK + RSA VA+AP++P++AAGTMAGAVDLSFSSSANLEIF+LDFQS+D EL LV +
Sbjct: 1 MDCIKSIGRSAFVAIAPESPFIAAGTMAGAVDLSFSSSANLEIFELDFQSNDRELKLVGQ 60
Query: 314 YPSSDRFNRLSWGKGGSGSDGFSLGLVAGGLVDGNIDIWNPLSLIRSENESALVGHLVRH 493
SS+RFNRL+WG GSGSD GL+AGGLVDGNI +WNP+S E A V L +H
Sbjct: 61 CQSSERFNRLAWGSYGSGSD----GLIAGGLVDGNIGLWNPIS--SESGEIAHVRDLSKH 114
Query: 494 KGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFPPLKGSGSASQGEISFLSWN 673
KGPVRGLEFN +PN LASGA+DG +CIWDLANPS+P+H+ LKG+GS Q EIS LSWN
Sbjct: 115 KGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPSKPSHY--LKGTGSYMQSEISSLSWN 172
Query: 674 SKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVLQWNPDIATQLVVASDEDGS 853
QH+LASTS+NGTTV+WD+ +K + +V RCSVLQW+PD Q++VASDED S
Sbjct: 173 KGFQHVLASTSHNGTTVIWDVNNEKIITDLKTTV--RCSVLQWDPDHFNQILVASDEDSS 230
Query: 854 PSLRLWDMRNIITPIKEFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDTISGE 1021
P+++ D +T GVIAM WCP+DS YLLTCGKD+RTICW+T +G+
Sbjct: 231 PNVKSGD-----------TCYTTGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGK 275
>dbj|BAB47154.1| Sec31p [Oryza sativa]
Length = 1023
Score = 291 bits (745), Expect = 1e-77
Identities = 134/195 (68%), Positives = 161/195 (81%), Gaps = 2/195 (1%)
Frame = +2
Query: 443 LIRSEN--ESALVGHLVRHKGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFP 616
+I SE E ALV L +H GPV GLEF+ + PN LASGAE GE+CIWDL NPSEP FP
Sbjct: 1 MINSEGKAEDALVARLEKHTGPVCGLEFSELTPNRLASGAEQGELCIWDLKNPSEPVVFP 60
Query: 617 PLKGSGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSVL 796
PLK GS++Q EIS+L+WN K QHILA+ S NG TVVWDL+ QKP+ SF+DS R +CSVL
Sbjct: 61 PLKSVGSSAQAEISYLTWNPKFQHILATASSNGMTVVWDLRNQKPLTSFSDSNRTKCSVL 120
Query: 797 QWNPDIATQLVVASDEDGSPSLRLWDMRNIITPIKEFVGHTRGVIAMSWCPNDSSYLLTC 976
QWNPD++TQL+VASD+D SPSLR+WD+R I+P++EFVGH++GVIAMSWCP DSSYLLTC
Sbjct: 121 QWNPDMSTQLIVASDDDNSPSLRVWDVRKTISPVREFVGHSKGVIAMSWCPYDSSYLLTC 180
Query: 977 GKDSRTICWDTISGE 1021
KD+RTICWDT+SGE
Sbjct: 181 SKDNRTICWDTVSGE 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 923,847,503
Number of Sequences: 1393205
Number of extensions: 22084962
Number of successful extensions: 120710
Number of sequences better than 10.0: 1517
Number of HSP's better than 10.0 without gapping: 87695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112461
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59601274632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
