Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000361A_C01 KMC000361A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197483.1| putative protein; protein id: At5g19820.1, supp... 216 2e-55
gb|AAL83632.1|AC093017_16 putative Ran binding protein [Oryza sa... 122 5e-27
gb|AAH46946.1| Similar to karyopherin (importin) beta 3 [Xenopus... 89 3e-17
gb|AAO33395.1|AF468651_1 karyopherin-beta 3 variant [Xenopus lae... 86 3e-16
ref|NP_524226.1| Karyopherin beta 3 CG1059-PA gi|7296831|gb|AAF5... 84 1e-15
>ref|NP_197483.1| putative protein; protein id: At5g19820.1, supported by cDNA:
gi_14334741, supported by cDNA: gi_15293298 [Arabidopsis
thaliana] gi|14334742|gb|AAK59549.1| unknown protein
[Arabidopsis thaliana] gi|15293299|gb|AAK93760.1|
unknown protein [Arabidopsis thaliana]
Length = 1116
Score = 216 bits (549), Expect = 2e-55
Identities = 108/151 (71%), Positives = 127/151 (83%)
Frame = +2
Query: 155 MDPESTQLQQAQLAAVLGADPSQFESLISQLMTASNEERSQAEALFNLCKQTDPDTLSLK 334
M E+ QLQQAQLA VLG+D + FE+LIS LM++SNE+RS AE+LFNL KQ++PDTLSLK
Sbjct: 1 MASEANQLQQAQLAMVLGSDSAPFETLISHLMSSSNEQRSSAESLFNLAKQSNPDTLSLK 60
Query: 335 LGHLLNSSPLQEARAMSAILLRKQLTRDDSYLWPRLSPQTQSTLKSILLSSIQTESTKSI 514
L HLL SP E RAM+A+LLRK LTRDD+YLWPRLS TQS+LKS +L IQ E KSI
Sbjct: 61 LAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSI 120
Query: 515 SKKLCDTISELASGILPDNGWPELLPFMFQC 607
SKK+CDT+SELASGILP+NGWPELLPF+FQC
Sbjct: 121 SKKICDTVSELASGILPENGWPELLPFVFQC 151
>gb|AAL83632.1|AC093017_16 putative Ran binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 1114
Score = 122 bits (305), Expect = 5e-27
Identities = 67/152 (44%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Frame = +2
Query: 155 MDPESTQLQQAQLAAVLGADPSQFESLISQLMTASNEERSQAEALFNLCKQTDPDTLSLK 334
M+P++ + A AAVLGADP+ +L+ L + +NE RS+AE +F+ + + PD L+L+
Sbjct: 1 MNPQA-EGDAAAAAAVLGADPAGLTALLGDLTSPANEARSRAEGMFHALRASHPDALALR 59
Query: 335 LGHLLNSSPLQEARAMSAILLRKQLT-RDDSYLWPRLSPQTQSTLKSILLSSIQ-TESTK 508
L HLL SP + M+A+LLR+ ++ ++++P LSP TQS+L+++LLS+ T +K
Sbjct: 60 LAHLL-LSPAHPSAPMAAVLLRRLISPGSQAFVYPGLSPATQSSLRALLLSAASATGLSK 118
Query: 509 SISKKLCDTISELASGILPDNGWPELLPFMFQ 604
SISKKL D ++ELAS +LP N WP+LL F+++
Sbjct: 119 SISKKLSDAVAELASFLLPSNAWPDLLTFLYK 150
>gb|AAH46946.1| Similar to karyopherin (importin) beta 3 [Xenopus laevis]
Length = 1107
Score = 89.4 bits (220), Expect = 3e-17
Identities = 50/139 (35%), Positives = 79/139 (55%), Gaps = 3/139 (2%)
Frame = +2
Query: 194 AAVLGADPSQFESLISQLMTASNEERSQAEALFNLCKQTDPDTLSLKLGHLLNSSPLQEA 373
AA + A+ QF L+ L++ N R QAE + P ++ L + N + +EA
Sbjct: 11 AAAMAAEQQQFYLLLGNLLSPENGARKQAEETYETIP--GPSKITFLLQAIRNGAVAEEA 68
Query: 374 RAMSAILLRKQLTRDDSYLWPRLSPQTQSTLKSILLSSIQTESTKSISKKLCDTISELAS 553
R M+A+LLR+ L+ ++P L Q+ ++S LL +IQ ES S+ KK+CD ++ELA
Sbjct: 69 RQMAAVLLRRLLSSAFEEVYPSLPVDLQTAIRSELLLAIQVESQSSMRKKICDIVAELAR 128
Query: 554 GILPDNG---WPELLPFMF 601
++ D+G WPE L F+F
Sbjct: 129 NLIDDDGNNQWPEALKFLF 147
>gb|AAO33395.1|AF468651_1 karyopherin-beta 3 variant [Xenopus laevis]
Length = 1094
Score = 86.3 bits (212), Expect = 3e-16
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Frame = +2
Query: 203 LGADPSQFESLISQLMTASNEERSQAEALFNLCKQTDPDTLSLKLGHLLNSSPLQEARAM 382
+ A+ QF L+ L++ N R QAE + P ++ L + N + +EAR M
Sbjct: 1 MAAEQQQFYLLLGNLLSPENGARKQAEETYETIP--GPSKITFLLQAIRNGAAAEEARQM 58
Query: 383 SAILLRKQLTRDDSYLWPRLSPQTQSTLKSILLSSIQTESTKSISKKLCDTISELASGIL 562
+A+LLR+ L+ ++P L Q+ ++S LL +IQ ES S+ KK CD ++ELA ++
Sbjct: 59 AAVLLRRLLSSSFEEVYPSLPVDLQTAIRSELLLAIQVESLSSMRKKTCDIVAELARNLI 118
Query: 563 PDNG---WPELLPFMF 601
D+G WPE L F+F
Sbjct: 119 DDDGNNQWPEALKFLF 134
>ref|NP_524226.1| Karyopherin beta 3 CG1059-PA gi|7296831|gb|AAF52107.1| CG1059-PA
[Drosophila melanogaster]
Length = 1105
Score = 84.0 bits (206), Expect = 1e-15
Identities = 45/142 (31%), Positives = 81/142 (56%), Gaps = 7/142 (4%)
Frame = +2
Query: 203 LGADPSQFESLISQLMTASNEERSQAEALFNLCKQTDPDTLSLKLGHLL----NSSPLQE 370
+ AD + F+ L++ L++ N+ R QAE +N + LK+ HLL N +E
Sbjct: 1 MAADQAHFQQLLASLLSTDNDVRQQAEEAYNNLSR------ELKVTHLLGNIQNGQQSEE 54
Query: 371 ARAMSAILLRKQLTRDDSYLWPRLSPQTQSTLKSILLSSIQTESTKSISKKLCDTISELA 550
AR M+A+LLR+ T + + L ++Q+ L +L ++Q E T + +K+C+ ++E+A
Sbjct: 55 ARQMAAVLLRRLFTTEFFDFYKGLPAESQNQLLQQILLAVQQEVTPQLRRKICEVVAEVA 114
Query: 551 SGILPD---NGWPELLPFMFQC 607
++ + N WP++L F+FQC
Sbjct: 115 RNLIDEDCNNQWPDILQFLFQC 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,999,423
Number of Sequences: 1393205
Number of extensions: 13158488
Number of successful extensions: 86605
Number of sequences better than 10.0: 504
Number of HSP's better than 10.0 without gapping: 68122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82284
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
