Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000360A_C01 KMC000360A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187198.1| unknown protein; protein id: At3g05470.1 [Arabi... 146 3e-34
emb|CAD40996.1| OSJNBa0072F16.20 [Oryza sativa (japonica cultiva... 127 1e-28
gb|AAN05367.1| Putative formin-like protein [Oryza sativa (japon... 112 3e-24
ref|NP_201548.1| formin-like protein; protein id: At5g67470.1 [A... 106 3e-22
ref|NP_189177.1| expressed protein; protein id: At3g25500.1, sup... 105 5e-22
>ref|NP_187198.1| unknown protein; protein id: At3g05470.1 [Arabidopsis thaliana]
gi|7596775|gb|AAF64546.1| unknown protein [Arabidopsis
thaliana]
Length = 884
Score = 146 bits (368), Expect = 3e-34
Identities = 77/135 (57%), Positives = 99/135 (73%)
Frame = -1
Query: 647 LSTELYNVKKTATIDLDVLASSVSNLSEGVARMQNLVDMELREDEGSMNFVRSMKMFLNY 468
L+TEL NVKKTATIDL+ L +SVSNL +G+ ++ L +L+ DE + FV SM FL Y
Sbjct: 751 LNTELRNVKKTATIDLEGLVTSVSNLRDGLGQLSCLASEKLKGDEENRAFVSSMSSFLRY 810
Query: 467 ADVNLKELRGDEDRVLARVKEITEYFHGVVMSKEDANLLRIFVIVRDFLGMLDNVCKELR 288
+ +L+ELR DE R++ RV EI EYFHG V ++ N LRIFVIVRDFLGMLD+VC+ELR
Sbjct: 811 GEKSLEELREDEKRIMERVGEIAEYFHGDVRG-DEKNPLRIFVIVRDFLGMLDHVCRELR 869
Query: 287 RSRTPRTPNPLAPLQ 243
R P +P+PLAP +
Sbjct: 870 CVRVPNSPSPLAPFR 884
>emb|CAD40996.1| OSJNBa0072F16.20 [Oryza sativa (japonica cultivar-group)]
Length = 831
Score = 127 bits (320), Expect = 1e-28
Identities = 70/130 (53%), Positives = 92/130 (69%)
Frame = -1
Query: 647 LSTELYNVKKTATIDLDVLASSVSNLSEGVARMQNLVDMELREDEGSMNFVRSMKMFLNY 468
L EL NV+KTAT+DLDVL +SVS LS G++R++ LV +L DE + FV M F+ +
Sbjct: 696 LGAELTNVRKTATVDLDVLTTSVSGLSHGLSRIKELVGSDLSGDERNQCFVAFMAPFVAH 755
Query: 467 ADVNLKELRGDEDRVLARVKEITEYFHGVVMSKEDANLLRIFVIVRDFLGMLDNVCKELR 288
A ++EL E RVLA V+EITEY+HG V K++A+ LRIFVIVRDFLGML+ VCKE+R
Sbjct: 756 AGEVIRELEDGERRVLAHVREITEYYHGDV-GKDEASPLRIFVIVRDFLGMLERVCKEVR 814
Query: 287 RSRTPRTPNP 258
++ NP
Sbjct: 815 GAKNCHGGNP 824
>gb|AAN05367.1| Putative formin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 849
Score = 112 bits (281), Expect = 3e-24
Identities = 59/119 (49%), Positives = 87/119 (72%)
Frame = -1
Query: 647 LSTELYNVKKTATIDLDVLASSVSNLSEGVARMQNLVDMELREDEGSMNFVRSMKMFLNY 468
LSTEL NVK+ AT+D DVL VS L G+ ++++++ +E + +G +NF +M+ FL
Sbjct: 688 LSTELGNVKRAATMDFDVLHGYVSKLEAGLGKIKSVLQLEKQCSQG-VNFFATMREFLKE 746
Query: 467 ADVNLKELRGDEDRVLARVKEITEYFHGVVMSKEDANLLRIFVIVRDFLGMLDNVCKEL 291
A+ ++++R DE L RVKEITEYFHG + KE+A+ LRIF++VRDFL MLD+VC+E+
Sbjct: 747 AEQEIEQVRHDEKAALGRVKEITEYFHGNAV-KEEAHPLRIFMVVRDFLSMLDHVCREV 804
>ref|NP_201548.1| formin-like protein; protein id: At5g67470.1 [Arabidopsis thaliana]
gi|9757868|dbj|BAB08455.1| formin-like protein
[Arabidopsis thaliana]
Length = 899
Score = 106 bits (264), Expect = 3e-22
Identities = 55/120 (45%), Positives = 85/120 (70%)
Frame = -1
Query: 647 LSTELYNVKKTATIDLDVLASSVSNLSEGVARMQNLVDMELREDEGSMNFVRSMKMFLNY 468
LS +L NVKK+A +D DVL+S V+ L G+ ++++ + E + F SMK FL
Sbjct: 735 LSRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLRSFLKTETTQGR----FFDSMKTFLKE 790
Query: 467 ADVNLKELRGDEDRVLARVKEITEYFHGVVMSKEDANLLRIFVIVRDFLGMLDNVCKELR 288
A+ +++++G E + L+ VKE+TEYFHG ++E+A+ LRIF++VRDFLG+LDNVCKE++
Sbjct: 791 AEEEIRKIKGGERKALSMVKEVTEYFHGNA-AREEAHPLRIFMVVRDFLGVLDNVCKEVK 849
>ref|NP_189177.1| expressed protein; protein id: At3g25500.1, supported by cDNA:
gi_19423898, supported by cDNA: gi_6503009 [Arabidopsis
thaliana] gi|6503010|gb|AAF14548.1| formin-like protein
AHF1 [Arabidopsis thaliana] gi|9279730|dbj|BAB01320.1|
formin-like protein [Arabidopsis thaliana]
gi|19423899|gb|AAL87275.1| putative formin protein AHF1
[Arabidopsis thaliana] gi|23296692|gb|AAN13148.1|
putative formin protein AHF1 [Arabidopsis thaliana]
Length = 1051
Score = 105 bits (262), Expect = 5e-22
Identities = 56/121 (46%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Frame = -1
Query: 647 LSTELYNVKKTATIDLDVLASSVSNLSEGVARMQNLVDME--LREDEGSMNFVRSMKMFL 474
L +EL NVKK A +D +VL+S VS LS+G+A++ + ++ + E+ S F SMK FL
Sbjct: 872 LCSELSNVKKAAAMDSEVLSSYVSKLSQGIAKINEAIQVQSTITEESNSQRFSESMKTFL 931
Query: 473 NYADVNLKELRGDEDRVLARVKEITEYFHGVVMSKEDANLLRIFVIVRDFLGMLDNVCKE 294
A+ + ++ E L+ VKEITEYFHG +KE+A+ RIF++VRDFLG++D VCKE
Sbjct: 932 KRAEEEIIRVQAQESVALSLVKEITEYFHG-NSAKEEAHPFRIFLVVRDFLGVVDRVCKE 990
Query: 293 L 291
+
Sbjct: 991 V 991
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,887,313
Number of Sequences: 1393205
Number of extensions: 12060136
Number of successful extensions: 34601
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 33022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34519
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
