Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000359A_C04 KMC000359A_c04
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60861.1| unknown [Arabidopsis thaliana] 56 5e-07
gb|AAG51531.1|AC051631_11 unknown protein; 5864-31259 [Arabidops... 56 5e-07
pir||A96521 protein F21D18.22 [imported] - Arabidopsis thaliana ... 56 5e-07
ref|NP_175242.2| unknown protein; protein id: At1g48090.1 [Arabi... 56 5e-07
ref|NP_700689.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.2
>gb|AAM60861.1| unknown [Arabidopsis thaliana]
Length = 418
Score = 55.8 bits (133), Expect = 5e-07
Identities = 36/84 (42%), Positives = 49/84 (57%), Gaps = 7/84 (8%)
Frame = -3
Query: 404 VTHRRVILLQQPT---AQRKCNTARES----YSILWYGFSTMDLTHGKKYNLKALPLLRL 246
+THRRVILLQQP+ QRK A+++ + ILW TM+L+ GKK + P RL
Sbjct: 267 ITHRRVILLQQPSNIMGQRKFIPAKDACSIQWDILWNDLVTMELSDGKK-DPPNSPPSRL 325
Query: 245 FLFSQPRSLDVKENICIVKCSPES 174
L+ + + D KE +VKC P S
Sbjct: 326 ILYLKAKPHDPKEQFRVVKCIPNS 349
>gb|AAG51531.1|AC051631_11 unknown protein; 5864-31259 [Arabidopsis thaliana]
Length = 4099
Score = 55.8 bits (133), Expect = 5e-07
Identities = 36/84 (42%), Positives = 49/84 (57%), Gaps = 7/84 (8%)
Frame = -3
Query: 404 VTHRRVILLQQPT---AQRKCNTARES----YSILWYGFSTMDLTHGKKYNLKALPLLRL 246
+THRRVILLQQP+ QRK A+++ + ILW TM+L+ GKK + P RL
Sbjct: 3967 ITHRRVILLQQPSNIMGQRKFIPAKDACSIQWDILWNDLVTMELSDGKK-DPPNSPPSRL 4025
Query: 245 FLFSQPRSLDVKENICIVKCSPES 174
L+ + + D KE +VKC P S
Sbjct: 4026 ILYLKAKPHDPKEQFRVVKCIPNS 4049
>pir||A96521 protein F21D18.22 [imported] - Arabidopsis thaliana
gi|8778517|gb|AAF79525.1|AC023673_13 F21D18.22
[Arabidopsis thaliana]
Length = 2684
Score = 55.8 bits (133), Expect = 5e-07
Identities = 36/84 (42%), Positives = 49/84 (57%), Gaps = 7/84 (8%)
Frame = -3
Query: 404 VTHRRVILLQQPT---AQRKCNTARES----YSILWYGFSTMDLTHGKKYNLKALPLLRL 246
+THRRVILLQQP+ QRK A+++ + ILW TM+L+ GKK + P RL
Sbjct: 2533 ITHRRVILLQQPSNIMGQRKFIPAKDACSIQWDILWNDLVTMELSDGKK-DPPNSPPSRL 2591
Query: 245 FLFSQPRSLDVKENICIVKCSPES 174
L+ + + D KE +VKC P S
Sbjct: 2592 ILYLKAKPHDPKEQFRVVKCIPNS 2615
>ref|NP_175242.2| unknown protein; protein id: At1g48090.1 [Arabidopsis thaliana]
Length = 4118
Score = 55.8 bits (133), Expect = 5e-07
Identities = 36/84 (42%), Positives = 49/84 (57%), Gaps = 7/84 (8%)
Frame = -3
Query: 404 VTHRRVILLQQPT---AQRKCNTARES----YSILWYGFSTMDLTHGKKYNLKALPLLRL 246
+THRRVILLQQP+ QRK A+++ + ILW TM+L+ GKK + P RL
Sbjct: 3967 ITHRRVILLQQPSNIMGQRKFIPAKDACSIQWDILWNDLVTMELSDGKK-DPPNSPPSRL 4025
Query: 245 FLFSQPRSLDVKENICIVKCSPES 174
L+ + + D KE +VKC P S
Sbjct: 4026 ILYLKAKPHDPKEQFRVVKCIPNS 4049
>ref|NP_700689.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495081|gb|AAN35413.1|AE014832_35 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 287
Score = 34.7 bits (78), Expect = 1.2
Identities = 22/65 (33%), Positives = 33/65 (49%)
Frame = +1
Query: 91 QCINIGKDYSNKIVIPNLNF*YFKSLICDSGLHFTMQIFSFTSNDLGCENKKSRKRGSAF 270
+C+ + K+ NKI P L Y S I L + IFSF S++ +NK ++ G
Sbjct: 219 ECLIVYKNVVNKIENPLLASIYAWSFILSLPLGVFIAIFSFPSSNNKNKNKPTQYSGMIH 278
Query: 271 RLYFF 285
+YFF
Sbjct: 279 NIYFF 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,689,799
Number of Sequences: 1393205
Number of extensions: 9822362
Number of successful extensions: 20259
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20248
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
