Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000356A_C01 KMC000356A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189803.1| putative transposase; protein id: At3g42170.1 [... 150 1e-35
ref|NP_178119.1| hypothetical protein; protein id: At1g80020.1 [... 134 8e-31
dbj|BAB91949.1| B1003B09.3 [Oryza sativa (japonica cultivar-group)] 125 6e-28
ref|NP_172982.1| hypothetical protein; protein id: At1g15300.1, ... 121 9e-27
ref|NP_177153.1| unknown protein; protein id: At1g69950.1 [Arabi... 105 5e-22
>ref|NP_189803.1| putative transposase; protein id: At3g42170.1 [Arabidopsis
thaliana] gi|11358700|pir||T46111 probable transposase -
Arabidopsis thaliana gi|6735290|emb|CAB68118.1| putative
transposase [Arabidopsis thaliana]
gi|27808618|gb|AAO24589.1| At3g42170 [Arabidopsis
thaliana]
Length = 696
Score = 150 bits (379), Expect = 1e-35
Identities = 68/101 (67%), Positives = 85/101 (83%)
Frame = -3
Query: 654 LTDFDAYIMETSSQQMKSELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARDILS 475
L+DFD YIMET+ Q +KSELDQYL+E+LLPRV +FDVL WWK NK+KYPTLSKMARDILS
Sbjct: 574 LSDFDTYIMETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILS 633
Query: 474 IPVSTVPSESFFDRKSQEMDQYRSSLRPEAVEALVCTQDWM 352
IPVS + FD + +EMD+Y++SLRPE VEAL+C ++W+
Sbjct: 634 IPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674
>ref|NP_178119.1| hypothetical protein; protein id: At1g80020.1 [Arabidopsis thaliana]
gi|25406625|pir||F96831 hypothetical protein F18B13.11
[imported] - Arabidopsis thaliana
gi|5902380|gb|AAD55482.1|AC009322_22 Hypothetical protein
[Arabidopsis thaliana]
gi|12324573|gb|AAG52234.1|AC011717_2 hypothetical
protein; 281-3511 [Arabidopsis thaliana]
Length = 1076
Score = 134 bits (338), Expect = 8e-31
Identities = 63/103 (61%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Frame = -3
Query: 651 TDFDAYIMETSS-QQMKSELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARDILS 475
+DF+ YI E S QQMKSELDQYLEESL+PR DF+VLGWW +N+ KYPTLSKMA D+LS
Sbjct: 959 SDFELYISEVGSHQQMKSELDQYLEESLIPRSQDFEVLGWWSLNRTKYPTLSKMAADVLS 1018
Query: 474 IPVSTVPSESFFDRKSQEMDQYRSSLRPEAVEALVCTQDWMQY 346
+P TV +S FD + ++MD YRSSLR +EAL C +DW ++
Sbjct: 1019 VPFCTVSPDSVFDTEVKKMDNYRSSLRHVTLEALFCAKDWFKH 1061
>dbj|BAB91949.1| B1003B09.3 [Oryza sativa (japonica cultivar-group)]
Length = 684
Score = 125 bits (313), Expect = 6e-28
Identities = 64/108 (59%), Positives = 78/108 (71%), Gaps = 5/108 (4%)
Frame = -3
Query: 654 LTDFDAYIME--TSSQQMKSELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARDI 481
L DFD Y+ E T Q K EL+ YLEE+L R PDFDVL WW+ N +KYPTLS+MARD+
Sbjct: 575 LVDFDMYLSEVTTMGQPFKHELELYLEEALTQRTPDFDVLKWWQDNTLKYPTLSRMARDV 634
Query: 480 LSIPVSTV-PSESFF--DRKSQEMDQYRSSLRPEAVEALVCTQDWMQY 346
L+IP+STV S F D S+ +D YRSSLRPE VEAL+C +DW+QY
Sbjct: 635 LAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVEALLCAKDWLQY 682
>ref|NP_172982.1| hypothetical protein; protein id: At1g15300.1, supported by cDNA:
gi_20260645 [Arabidopsis thaliana]
gi|25518036|pir||C86287 F9L1.24 protein - Arabidopsis
thaliana gi|5103828|gb|AAD39658.1|AC007591_23 Similar to
gi|22113 Ac transposase (ORFa) from Zea mays transcript
gb|X05424. [Arabidopsis thaliana]
gi|20260646|gb|AAM13221.1| similar to Ac transposase
[Arabidopsis thaliana]
Length = 799
Score = 121 bits (303), Expect = 9e-27
Identities = 55/102 (53%), Positives = 77/102 (74%)
Frame = -3
Query: 654 LTDFDAYIMETSSQQMKSELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARDILS 475
L+DF+ Y+ + M +ELDQYLEE+L+PR DF+VL WW++N YPTLSKMA D+LS
Sbjct: 699 LSDFEMYMTD-----MNTELDQYLEENLIPRSEDFNVLSWWRVNNTNYPTLSKMAVDLLS 753
Query: 474 IPVSTVPSESFFDRKSQEMDQYRSSLRPEAVEALVCTQDWMQ 349
+P STV +S FD + ++MD YR+SL E +EAL+CT+DW++
Sbjct: 754 VPFSTVSPDSVFDTEVKQMDNYRTSLPGETLEALLCTKDWLK 795
>ref|NP_177153.1| unknown protein; protein id: At1g69950.1 [Arabidopsis thaliana]
gi|25406015|pir||A96722 unknown protein T17F3.2
[imported] - Arabidopsis thaliana
gi|12325234|gb|AAG52564.1|AC010675_12 unknown protein;
6859-4829 [Arabidopsis thaliana]
Length = 676
Score = 105 bits (262), Expect = 5e-22
Identities = 52/107 (48%), Positives = 74/107 (68%), Gaps = 5/107 (4%)
Frame = -3
Query: 654 LTDFDAYIMETSS---QQMKSELDQYLEESLLPRVPDFDVLGWWKINKVKYPTLSKMARD 484
LT+FD YI ET++ Q KS+L++YLEE L PR DFD+L WWK++ KYP LS MAR+
Sbjct: 564 LTEFDRYINETTTTPGQDSKSDLEKYLEEPLFPRNSDFDILNWWKVHTPKYPILSMMARN 623
Query: 483 ILSIPVSTVPSE--SFFDRKSQEMDQYRSSLRPEAVEALVCTQDWMQ 349
+L++P+ V SE +F + + + + SLRP V+AL+C QDW+Q
Sbjct: 624 VLAVPMLNVSSEEDAFETCQRRRVSETWRSLRPSTVQALMCAQDWIQ 670
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,927,177
Number of Sequences: 1393205
Number of extensions: 13350261
Number of successful extensions: 30327
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 29350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30295
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
