Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000354A_C02 KMC000354A_c02
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189177.1| expressed protein; protein id: At3g25500.1, sup... 177 1e-43
gb|AAF24496.1|AF213695_1 FH protein NFH1 [Nicotiana tabacum] 161 6e-39
gb|AAF24497.1|AF213696_1 FH protein NFH2 [Nicotiana tabacum] 157 2e-37
dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa ... 151 6e-36
gb|AAC32145.1| hypothetical protein [Picea mariana] 102 5e-21
>ref|NP_189177.1| expressed protein; protein id: At3g25500.1, supported by cDNA:
gi_19423898, supported by cDNA: gi_6503009 [Arabidopsis
thaliana] gi|6503010|gb|AAF14548.1| formin-like protein
AHF1 [Arabidopsis thaliana] gi|9279730|dbj|BAB01320.1|
formin-like protein [Arabidopsis thaliana]
gi|19423899|gb|AAL87275.1| putative formin protein AHF1
[Arabidopsis thaliana] gi|23296692|gb|AAN13148.1|
putative formin protein AHF1 [Arabidopsis thaliana]
Length = 1051
Score = 177 bits (449), Expect = 1e-43
Identities = 86/111 (77%), Positives = 98/111 (87%)
Frame = -2
Query: 652 MNKFMRMXEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDR 473
M F++ EEEI+R+QAQESVALSLVKEITEYFHGN +KEEAHPFRIF+VVRDFL V+DR
Sbjct: 927 MKTFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDR 986
Query: 472 VCKEVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVQLKRPHSSSDDDSSS 320
VCKEVGMINERTMVSSAH+FPVPVNPM+PQPLPGLV ++ SSS S+S
Sbjct: 987 VCKEVGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRRQSSSSSSSSSTS 1037
>gb|AAF24496.1|AF213695_1 FH protein NFH1 [Nicotiana tabacum]
Length = 868
Score = 161 bits (408), Expect = 6e-39
Identities = 81/109 (74%), Positives = 92/109 (84%)
Frame = -2
Query: 643 FMRMXEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCK 464
F+ +EI+R+QA ESVA+SLVKEITEYFHGN ++EEAHPFRIFMVVRDFL VLDRVCK
Sbjct: 761 FLHFVVQEIIRLQAVESVAMSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLMVLDRVCK 820
Query: 463 EVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVQLKRPHSSSDDDSSSP 317
EVGMINERT+VSSAH+FPVPVNP L + GL + R HS SDDDSSSP
Sbjct: 821 EVGMINERTIVSSAHKFPVPVNPTLQPAIGGLTAI-RQHSFSDDDSSSP 868
>gb|AAF24497.1|AF213696_1 FH protein NFH2 [Nicotiana tabacum]
Length = 835
Score = 157 bits (396), Expect = 2e-37
Identities = 78/112 (69%), Positives = 97/112 (85%)
Frame = -2
Query: 652 MNKFMRMXEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDR 473
MN+FM++ EE+ILR+QAQE++A+SLVKEITEY HG+ ++EEAHPFRIFMVV+DFL +LD
Sbjct: 725 MNRFMKVAEEKILRLQAQETLAMSLVKEITEYVHGDSAREEAHPFRIFMVVKDFLMILDC 784
Query: 472 VCKEVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVQLKRPHSSSDDDSSSP 317
VCKEVG INERT+VSSA +FPVPVNP L QP+ + KR HSSSD++SSSP
Sbjct: 785 VCKEVGTINERTIVSSAQKFPVPVNPNL-QPVISGFRAKRLHSSSDEESSSP 835
>dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa (japonica
cultivar-group)] gi|22093600|dbj|BAC06896.1| putative
formin-like protein AHF1 [Oryza sativa (japonica
cultivar-group)]
Length = 960
Score = 151 bits (382), Expect = 6e-36
Identities = 74/111 (66%), Positives = 92/111 (82%)
Frame = -2
Query: 652 MNKFMRMXEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDR 473
M KF++ +++I+R+QAQESVALSLVKEITEYFHG+ +KEEAHPFRIFMVVRDFL+VLD+
Sbjct: 846 MQKFLKRADDDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQ 905
Query: 472 VCKEVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVQLKRPHSSSDDDSSS 320
VCKEVG IN+RT+ SS FPVPVNPM+PQ P + L+ SDD+SS+
Sbjct: 906 VCKEVGRINDRTIASSVRHFPVPVNPMMPQLFPRIHALRA--GISDDESSA 954
>gb|AAC32145.1| hypothetical protein [Picea mariana]
Length = 117
Score = 102 bits (254), Expect = 5e-21
Identities = 56/112 (50%), Positives = 75/112 (66%)
Frame = -2
Query: 652 MNKFMRMXEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDR 473
M+ F++ EE+I RIQ++E+ A SLV+E TEYFHG+ +KEE P R F+VV+DFL VLD+
Sbjct: 8 MSSFLQEAEEDIARIQSEENRAFSLVRETTEYFHGDAAKEEGRPLRFFVVVKDFLGVLDQ 67
Query: 472 VCKEVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVQLKRPHSSSDDDSSSP 317
VC+E+G R M S+ R P V + PL +RP SSDD+SSSP
Sbjct: 68 VCREIGKTRTR-MAQSSPRPPQVVAHAISMPLFPKALQRRP-DSSDDESSSP 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,843,509
Number of Sequences: 1393205
Number of extensions: 11300994
Number of successful extensions: 26875
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 25713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26855
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
