Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000348A_C01 KMC000348A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86264 protein F3F19.5 [imported] - Arabidopsis thaliana gi... 87 1e-16
ref|NP_172762.2| hypothetical protein; protein id: At1g13030.1, ... 87 1e-16
pir||T34073 paranemin - chicken 36 0.28
emb|CAC07961.1| putative mitogen-activated protein kinase 7 [Lei... 33 2.4
ref|NP_806354.1| large repetitive protein [Salmonella enterica s... 32 4.1
>pir||C86264 protein F3F19.5 [imported] - Arabidopsis thaliana
gi|4850386|gb|AAD31056.1|AC007357_5 F3F19.5 [Arabidopsis
thaliana]
Length = 547
Score = 86.7 bits (213), Expect = 1e-16
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Frame = +3
Query: 102 DVRMVKHANSNSATAVASTDALVNPPKATNGSTDEKHVDLFT---ENGGVSVWDEINEAL 272
DVR VK ++S+SA S AL P ++ + +L T ENG VS W+E++EAL
Sbjct: 442 DVRSVKTSSSDSAEVAKS--ALPEPDQSAKKPKLSANKELQTPAKENGEVSPWEELSEAL 499
Query: 273 NAKKAKLSQ-ENGWTKEETTGTRSWSYRAMRGSALGPTMARLRSQNQL 413
+AKKA LSQ NGW K+ ++ SWSY+A+RGSA+GP M LRSQ ++
Sbjct: 500 SAKKAALSQANNGWNKKGSSSGGSWSYKALRGSAMGPVMNYLRSQKEI 547
>ref|NP_172762.2| hypothetical protein; protein id: At1g13030.1, supported by cDNA:
gi_20260257 [Arabidopsis thaliana]
gi|20260258|gb|AAM13027.1| unknown protein [Arabidopsis
thaliana] gi|22136510|gb|AAM91333.1| unknown protein
[Arabidopsis thaliana]
Length = 608
Score = 86.7 bits (213), Expect = 1e-16
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Frame = +3
Query: 102 DVRMVKHANSNSATAVASTDALVNPPKATNGSTDEKHVDLFT---ENGGVSVWDEINEAL 272
DVR VK ++S+SA S AL P ++ + +L T ENG VS W+E++EAL
Sbjct: 503 DVRSVKTSSSDSAEVAKS--ALPEPDQSAKKPKLSANKELQTPAKENGEVSPWEELSEAL 560
Query: 273 NAKKAKLSQ-ENGWTKEETTGTRSWSYRAMRGSALGPTMARLRSQNQL 413
+AKKA LSQ NGW K+ ++ SWSY+A+RGSA+GP M LRSQ ++
Sbjct: 561 SAKKAALSQANNGWNKKGSSSGGSWSYKALRGSAMGPVMNYLRSQKEI 608
>pir||T34073 paranemin - chicken
Length = 1606
Score = 35.8 bits (81), Expect = 0.28
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Frame = +3
Query: 189 NGSTDEKHVDLFTENGGVSVWDEINEA----LNAKKAKLSQENGWTKEETTG------TR 338
+G T E+H DL E+G + V E + L + L +E+G T+EE +R
Sbjct: 953 HGDTQEEHGDLQEEHGDLQVEHEDLQVEHGDLQVEHGDLQEEHGDTQEEHRALQGMGWSR 1012
Query: 339 SWSYRAMRGSALGPTMARLRS 401
+W RG G TM ++S
Sbjct: 1013 TWCCSLERGHGAGKTMTSVKS 1033
>emb|CAC07961.1| putative mitogen-activated protein kinase 7 [Leishmania mexicana]
Length = 551
Score = 32.7 bits (73), Expect = 2.4
Identities = 22/67 (32%), Positives = 27/67 (39%)
Frame = +3
Query: 189 NGSTDEKHVDLFTENGGVSVWDEINEALNAKKAKLSQENGWTKEETTGTRSWSYRAMRGS 368
NG+ D K D GGV W N A S N + E G WS A+RG+
Sbjct: 236 NGNCDMKLCDFGLSRGGVPAWPHENTLTAVATAAKSNAN---ELEDWGLFCWSSSAVRGA 292
Query: 369 ALGPTMA 389
+ P A
Sbjct: 293 SSSPHAA 299
>ref|NP_806354.1| large repetitive protein [Salmonella enterica subsp. enterica serovar
Typhi Ty2] gi|29138645|gb|AAO70214.1| large repetitive
protein [Salmonella enterica subsp. enterica serovar
Typhi Ty2]
Length = 3624
Score = 32.0 bits (71), Expect = 4.1
Identities = 19/84 (22%), Positives = 37/84 (43%)
Frame = +3
Query: 126 NSNSATAVASTDALVNPPKATNGSTDEKHVDLFTENGGVSVWDEINEALNAKKAKLSQEN 305
N A ++ + D+ + KA NG TD +++ + +++++ L+ A L
Sbjct: 3211 NGVGADSIKTPDSFIYTLKAPNGDTDTASLNITPTARALDAINDVSDTLSV--ATLQDTA 3268
Query: 306 GWTKEETTGTRSWSYRAMRGSALG 377
W + + G+ SW GS G
Sbjct: 3269 AWL-DSSVGSASWGLLGKSGSGSG 3291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,086,072
Number of Sequences: 1393205
Number of extensions: 10045540
Number of successful extensions: 28668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28649
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
