Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000347A_C01 KMC000347A_c01
(703 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_231502.1| similar to Neurogenic locus notch homolog prote... 32 8.6
gb|AAF24025.1|AF090901_1 PRO0195 [Homo sapiens] 32 8.6
>ref|XP_231502.1| similar to Neurogenic locus notch homolog protein 1 precursor (Notch
1) (Motch A) (mT14) (p300) [Rattus norvegicus]
Length = 1540
Score = 32.0 bits (71), Expect = 8.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 578 FFWELRPVQNRMLHCAGTSIVALTSI-----STRRSGANHAVPA 462
F W N+ LH AGTS +++ S+ +T++ G +H PA
Sbjct: 996 FTWSPATTFNKFLHSAGTSHLSIKSVTTQMDNTKKGGVSHQTPA 1039
>gb|AAF24025.1|AF090901_1 PRO0195 [Homo sapiens]
Length = 72
Score = 32.0 bits (71), Expect = 8.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 691 PLLICFMXVCSTLAIISVINNFCITLCICQEKLQKACSS 575
P +IC++ VC + + C+ +C+C + K CSS
Sbjct: 36 PTIICYLSVCMCVCV-------CVCVCVCVCVISKLCSS 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,162,428
Number of Sequences: 1393205
Number of extensions: 12311439
Number of successful extensions: 25577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25573
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
