Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000346A_C01 KMC000346A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563755.1| expressed protein; protein id: At1g05960.1, sup... 54 1e-06
pir||F86194 hypothetical protein [imported] - Arabidopsis thalia... 50 2e-05
ref|NP_704723.1| hypothetical protein [Plasmodium falciparum 3D7... 39 0.046
ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [... 36 0.30
ref|NP_047415.1| Orf1629=pp78/83=AcMNPV orf9 [Bombyx mori nuclea... 33 1.5
>ref|NP_563755.1| expressed protein; protein id: At1g05960.1, supported by cDNA:
gi_14194168 [Arabidopsis thaliana]
Length = 982
Score = 53.5 bits (127), Expect = 1e-06
Identities = 38/85 (44%), Positives = 48/85 (55%)
Frame = -3
Query: 515 MSVIHSFKHQQKTKAIVLSSKSEVEVPPLPFKALEYSKGDLKLVSQKPLKVQDPVPLLSH 336
MSV+ SFK Q TKAI S +E + L + E + D K + ++ Q + S
Sbjct: 901 MSVLRSFK-PQATKAIT-SEDNEKDEQYLLKETEEAGEDDEKAIIVADVQPQGQLGFFSQ 958
Query: 335 DHVQPNSLILPPSSPYDKFLKAAGC 261
+ V NS LPPSSPYDKFLKAAGC
Sbjct: 959 E-VPQNSFRLPPSSPYDKFLKAAGC 982
>pir||F86194 hypothetical protein [imported] - Arabidopsis thaliana
gi|8810459|gb|AAF80120.1|AC024174_2 Contains similarity
to an unknown protein T11A7.7 gi|2335096 from Arabidopsis
thaliana BAC T11A7 gb|AC002339 and contains a tropomyosin
PF|00261 domain. ESTs gb|AI995205, gb|N37925, gb|F13889,
gb|AV523107, gb|AV535948, gb|AV558461, gb|F13888 come
from this gene
Length = 1628
Score = 50.1 bits (118), Expect = 2e-05
Identities = 37/84 (44%), Positives = 47/84 (55%)
Frame = -3
Query: 515 MSVIHSFKHQQKTKAIVLSSKSEVEVPPLPFKALEYSKGDLKLVSQKPLKVQDPVPLLSH 336
MSV+ SFK Q TKAI S +E + L + E + D K + ++ Q + S
Sbjct: 908 MSVLRSFK-PQATKAIT-SEDNEKDEQYLLKETEEAGEDDEKAIIVADVQPQGQLGFFSQ 965
Query: 335 DHVQPNSLILPPSSPYDKFLKAAG 264
+ V NS LPPSSPYDKFLKAAG
Sbjct: 966 E-VPQNSFRLPPSSPYDKFLKAAG 988
>ref|NP_704723.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505084|emb|CAD51866.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1706
Score = 38.5 bits (88), Expect = 0.046
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 16 FTTTLFTKPLNMTNI-TKVYRQNHTLAGQKHPPLKKSKKKKKIIRRHISHTMDMNGRNYV 192
+T LFT NI + + + N T A K+ + KKKK+ ++ T D+N + Y+
Sbjct: 460 WTNILFTNSFTNVNILSHIDKYNGTYADLKYFSFHDTYKKKKL-NDFLNITFDINNKEYL 518
Query: 193 KKHLVYIIAKNEKMASM 243
+ + VYII N+++ M
Sbjct: 519 RNNNVYIIIANDEIKYM 535
>ref|NP_181714.1| hypothetical protein; protein id: At2g41830.1 [Arabidopsis thaliana]
gi|25408758|pir||F84846 hypothetical protein At2g41830
[imported] - Arabidopsis thaliana
gi|2335096|gb|AAC02765.1| hypothetical protein
[Arabidopsis thaliana]
Length = 961
Score = 35.8 bits (81), Expect = 0.30
Identities = 15/21 (71%), Positives = 16/21 (75%)
Frame = -3
Query: 323 PNSLILPPSSPYDKFLKAAGC 261
P + LP SSPYD FLKAAGC
Sbjct: 941 PQAFRLPASSPYDNFLKAAGC 961
>ref|NP_047415.1| Orf1629=pp78/83=AcMNPV orf9 [Bombyx mori nuclear polyhedrosis
virus] gi|3745837|gb|AAC63684.1| Orf1629=pp78/83=AcMNPV
orf9 [Bombyx mori nuclear polyhedrosis virus]
Length = 542
Score = 33.5 bits (75), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -3
Query: 464 LSSKSEVEVPPLPFKALEYSKGDLKLVSQKPLKVQDPVPLLSHDHVQPNSLILPPSSP 291
L S +E+PP P +AL S+ + P PVP + H+ +P +I+P + P
Sbjct: 135 LYSNYNIELPPPPPQALPRSRRPSVVQPAAPA----PVPTIVHEQTKPEQIIIPAAPP 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,746,297
Number of Sequences: 1393205
Number of extensions: 9238598
Number of successful extensions: 22240
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22204
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
