>KMC000344A_C01 KMC000344A_c01
tcatgcatctcgtccttttCTAAAAAGTTTATTTCTGTAACTTTAACATGAATGAAATGG
TACCTATAAAATCCCAAAAGCCCAGCACATGTATAATTTCAATCAAAAGCTGGAACCAAA
TTACTCAGAAACACTCTTTAGAAGAATGTTTTCTTATCAAGGGCTACAATCTCACTCCAA
TCTAAAGAGACCCAGCAATTTCTCCCTGCATTATTACATCCACTAGTTTGTGGACAATCC
TAGTCATCTTCTCCCTCTAAGGACCATTGGAAGGCCTGAAAATTGGATAGCCATTGACAC
CACAGGACATGCTTGAGTAATCTTGATAGTATGAGTAACCATTATTCTCTGGATTTCTCA
TTCCTAGATAAGATAGATCAGAACCAGGTACCTGCCATGGGTTTGGAACCAACCCATCTA
CCTTGCCATTTCCATATGCTGCTGCTGTGCTTGCCGCCTGAGGATGATATTCCCTATAAG
AGTCAAATTGCCGACCAGGGGAGCTGTAACCTTGCTGAAACCCTGGATCATGGTAACTTT
GCGATCTCTCAAACCGACAAGAACTGGATGCAGATTCCAAATCCTCACTTGTACCCAAGT
CTCCAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000344A_C01 KMC000344A_c01
         (606 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199169.1| unknown protein; protein id: At5g43560.1, suppo...    57  1e-07
dbj|BAB11619.1| gene_id:K9D7.6~unknown protein [Arabidopsis thal...    57  1e-07
dbj|BAC03272.1| P0490D09.24 [Oryza sativa (japonica cultivar-gro...    45  7e-04
ref|NP_171926.1| unknown protein; protein id: At1g04300.1 [Arabi...    43  0.003
gb|AAL40103.1| immunoglobulin light chain type III [Xenopus laevis]    35  0.76

>ref|NP_199169.1| unknown protein; protein id: At5g43560.1, supported by cDNA:
            gi_19310438 [Arabidopsis thaliana]
            gi|19310439|gb|AAL84956.1| AT5g43560/K9D7_6 [Arabidopsis
            thaliana]
          Length = 1055

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 41/103 (39%), Positives = 52/103 (49%), Gaps = 8/103 (7%)
 Frame = -3

Query: 547  RSQSYHDPGFQQGYSSPGRQFDSYREYHPQAASTAAAYGNGKVDGLVPNPWQVPGSDLSY 368
            RS+SY D GF Q          SY EY P +AS++  YGNG+      + WQ+   D S 
Sbjct: 967  RSRSYSDDGFHQ----------SYGEYMPHSASSSP-YGNGQTQ----SQWQMANMDFSL 1011

Query: 367  LGMRNPENNG------YSYYQDYSSMS--CGVNGYPIFRPSNG 263
              MRN ++        YSY+   SS     G+NGY  FRPSNG
Sbjct: 1012 PAMRNQDDVSASATATYSYFDLDSSNPNLSGINGYRDFRPSNG 1054

>dbj|BAB11619.1| gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
          Length = 1063

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 41/103 (39%), Positives = 52/103 (49%), Gaps = 8/103 (7%)
 Frame = -3

Query: 547  RSQSYHDPGFQQGYSSPGRQFDSYREYHPQAASTAAAYGNGKVDGLVPNPWQVPGSDLSY 368
            RS+SY D GF Q          SY EY P +AS++  YGNG+      + WQ+   D S 
Sbjct: 975  RSRSYSDDGFHQ----------SYGEYMPHSASSSP-YGNGQTQ----SQWQMANMDFSL 1019

Query: 367  LGMRNPENNG------YSYYQDYSSMS--CGVNGYPIFRPSNG 263
              MRN ++        YSY+   SS     G+NGY  FRPSNG
Sbjct: 1020 PAMRNQDDVSASATATYSYFDLDSSNPNLSGINGYRDFRPSNG 1062

>dbj|BAC03272.1| P0490D09.24 [Oryza sativa (japonica cultivar-group)]
          Length = 1278

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
 Frame = -3

Query: 604  GDLGTSEDLESASSSCRFERSQSYHDPGFQQGYSSPGRQFDSYREYHPQAASTAAAYGNG 425
            G+L  SE + S SSS R   +  Y+D G+   Y     + ++         ST  AY NG
Sbjct: 1168 GNLVDSE-VTSISSSGRLNLADHYYDEGYPMAYD----RLNALYRLREGQNSTLDAYSNG 1222

Query: 424  KVDGLVPNPWQVPGSDLSYLGMRNPENNGYSYYQ-DYSSMSCG-VNGYPIFRPSNG 263
            ++D +   PW    S+ +     NP  NG+S    +Y+++  G VNG  ++R +NG
Sbjct: 1223 RMDSITSKPWLHNFSNPAVNLGVNP--NGFSQQMGNYTNLGSGRVNGEHLYRHANG 1276

>ref|NP_171926.1| unknown protein; protein id: At1g04300.1 [Arabidopsis thaliana]
          Length = 1082

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 28/71 (39%), Positives = 35/71 (48%), Gaps = 12/71 (16%)
 Frame = -3

Query: 439  AYGNGKVDGLVPNPWQVPGSDLSYLGMR-NPENNGYS----YYQDY-------SSMSCGV 296
            A G    DG++P  WQ+   DLS   MR N   +G S    Y+  Y        S + G+
Sbjct: 1011 ARGPYGTDGMMPRQWQMTNMDLSLPAMRSNGMEDGTSSAANYHHSYFGLDASNPSFTSGI 1070

Query: 295  NGYPIFRPSNG 263
            NGY  FRPSNG
Sbjct: 1071 NGYTEFRPSNG 1081

>gb|AAL40103.1| immunoglobulin light chain type III [Xenopus laevis]
          Length = 236

 Score = 35.0 bits (79), Expect = 0.76
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = +2

Query: 404 WNQPIYLAISICCCCACRLRMIFPIRVKLPTRGAVTL 514
           W  P+   +S+C CCA ++ +  P  V +  RG VTL
Sbjct: 6   WTIPLLTLMSLCTCCAGQIVLTQPASVSVSVRGTVTL 42

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,777,732
Number of Sequences: 1393205
Number of extensions: 12574604
Number of successful extensions: 44576
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 43252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44500
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GENLf087e03 BP067092 1 547 2 GNf044e06 BP070612 20 495 3 GENLf045g05 BP064739 20 555 4 MPDL040a05_f AV778506 22 558 5 GENLf013c10 BP063020 30 519 6 SPDL086d04_f BP057389 54 569 7 MPDL068f07_f AV779980 81 592 8 GENLf070e11 BP066130 90 490 9 MRL042h03_f BP085785 93 558 10 GNLf016f05 BP075748 114 611

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