Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000343A_C02 KMC000343A_c02
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200483.1| cytosolic malate dehydrogenase; protein id: At5... 64 2e-09
gb|AAL11502.1|AF367442_1 NAD-dependent malate dehydrogenase [Pru... 57 3e-09
sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic gi|743117... 58 2e-08
sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic gi|743116... 54 2e-08
gb|AAK58078.1| malate dehydrogenase [Zea mays] 58 3e-08
>ref|NP_200483.1| cytosolic malate dehydrogenase; protein id: At5g56720.1
[Arabidopsis thaliana] gi|10176776|dbj|BAB09890.1|
cytosolic malate dehydrogenase [Arabidopsis thaliana]
Length = 339
Score = 63.5 bits (153), Expect = 2e-09
Identities = 29/40 (72%), Positives = 31/40 (77%)
Frame = -1
Query: 595 FVSMGVCSDGSYGIRHGLIYYFPVTCEKGVWNIVPGASND 476
+VSMGVCSDGSYGI GL+Y FPV CEKG W IV G S D
Sbjct: 273 WVSMGVCSDGSYGIPPGLVYSFPVICEKGSWKIVQGLSID 312
Score = 31.6 bits (70), Expect = 9.7
Identities = 13/21 (61%), Positives = 15/21 (70%), Gaps = 4/21 (19%)
Frame = -3
Query: 629 EWFLGAPKGTW----VCFNGS 579
+WFLG PKGTW VC +GS
Sbjct: 263 DWFLGTPKGTWVSMGVCSDGS 283
>gb|AAL11502.1|AF367442_1 NAD-dependent malate dehydrogenase [Prunus persica]
Length = 332
Score = 57.0 bits (136), Expect(2) = 3e-09
Identities = 27/43 (62%), Positives = 30/43 (68%)
Frame = -1
Query: 604 EHGFVSMGVCSDGSYGIRHGLIYYFPVTCEKGVWNIVPGASND 476
E +VSMGV SDGSY + GLIY FPVTC+ G W IV G S D
Sbjct: 264 EGTWVSMGVYSDGSYNVPSGLIYSFPVTCQNGEWKIVQGLSID 306
Score = 26.2 bits (56), Expect(2) = 3e-09
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -3
Query: 629 EWFLGAPKGTWV 594
+W LG P+GTWV
Sbjct: 257 DWVLGTPEGTWV 268
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic gi|7431171|pir||T02935 malate
dehydrogenase (EC 1.1.1.-), cytosolic - maize
gi|2286153|gb|AAB64290.1| cytoplasmic malate
dehydrogenase [Zea mays]
Length = 332
Score = 57.8 bits (138), Expect(2) = 2e-08
Identities = 28/43 (65%), Positives = 29/43 (67%)
Frame = -1
Query: 604 EHGFVSMGVCSDGSYGIRHGLIYYFPVTCEKGVWNIVPGASND 476
E FVSMGV SDGSYG+ GLIY FPVTC G W IV G D
Sbjct: 264 EGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPID 306
Score = 22.3 bits (46), Expect(2) = 2e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 629 EWFLGAPKGTWV 594
+W LG P+GT+V
Sbjct: 257 DWVLGTPEGTFV 268
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic gi|7431164|pir||T12433 malate
dehydrogenase (EC 1.1.1.37), cytosolic - common ice
plant gi|1524121|emb|CAA65384.1| malate dehydrogenase
[Mesembryanthemum crystallinum]
Length = 332
Score = 53.5 bits (127), Expect(2) = 2e-08
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = -1
Query: 604 EHGFVSMGVCSDGSYGIRHGLIYYFPVTCEKGVWNIVPGASND 476
E +VSMGV SDGSY + G+IY FPVTC+ G W IV G D
Sbjct: 264 EGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPID 306
Score = 26.6 bits (57), Expect(2) = 2e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 635 VWEWFLGAPKGTWV 594
+ +W LG P+GTWV
Sbjct: 255 IHDWVLGTPEGTWV 268
>gb|AAK58078.1| malate dehydrogenase [Zea mays]
Length = 110
Score = 57.8 bits (138), Expect(2) = 3e-08
Identities = 28/43 (65%), Positives = 29/43 (67%)
Frame = -1
Query: 604 EHGFVSMGVCSDGSYGIRHGLIYYFPVTCEKGVWNIVPGASND 476
E FVSMGV SDGSYG+ GLIY FPVTC G W IV G D
Sbjct: 42 EGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPID 84
Score = 22.3 bits (46), Expect(2) = 3e-08
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 629 EWFLGAPKGTWV 594
+W LG P+GT+V
Sbjct: 35 DWVLGTPEGTFV 46
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,604,266
Number of Sequences: 1393205
Number of extensions: 15048678
Number of successful extensions: 63054
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 52515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61406
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
