>KMC000342A_C01 KMC000342A_c01
gtaaaaggttAAAAAGAACAGAGCTTTTCATGCGAGTAAGGGCTTTAGCCAAGCATAGGC
ACTTAGCTAGAACTGGCATACATTCTTAGTAATACCAGTCATCACCTACACAACTCACTT
CTGTATTTCACTTGGGCCATCACAAGATTTACAGAGTTAAGTAAAGTTAATCTTATATAA
GAATGATTCACATAATATACTAGCTGAACTAGTACTGCTGGTAACTTGGACAATATTAAT
AAAATAAAAATCCTAACCCAGCATCCACTAGGAAGCTGGTTCCAAGGTTGGATCTGTGAC
ATTGTGTTAAAGAATCCACCCTAGGTACATATCAAGACCTAAACTTCTCACCATCTAACT
GGTAGTGATAGAGAACTAGGATCCAATTGTGAAAGTCCACCTCTTGTACAACACCCCATC
AACTCTACCACTTGTAATGAATATATCTCCTTTCCATTTGAGATATAGAGAAGCACCAAC
CAAGAGTTTTAAAGGTTAAGGTGGTTCATACCACCACTCAAATGAACAAGTTGACTGCCC
CAAATTGTTTGTGTTTGACATGTTTATCTATTAAACGAGGCTGCAGAGTTATCATCATAC
GGTCCCCTCCATGCATTGCCACTGTCTGTGCCACTGCAAGCTTGATTGGGGATTGGAACG
TTACCTAAATCTCCATCCAAGCTCATTTGCTGCACCTCAGTATATGACAGTA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000342A_C01 KMC000342A_c01
         (712 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB92475.1| IAA25 [Arabidopsis thaliana]                            80  3e-14
ref|NP_568400.1| auxin response transcription factor (ARF7); pro...    80  3e-14
gb|AAD04807.1| BIPOSTO [Arabidopsis thaliana]                          80  3e-14
gb|AAL85006.1| unknown protein [Arabidopsis thaliana]                  80  3e-14
gb|AAD02218.1| auxin response factor 7 [Arabidopsis thaliana]          80  3e-14

>gb|AAB92475.1| IAA25 [Arabidopsis thaliana]
          Length = 476

 Score = 80.1 bits (196), Expect = 3e-14
 Identities = 37/48 (77%), Positives = 39/48 (81%)
 Frame = -3

Query: 710 LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
           LS  EVQQMSLDG+   VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 429 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 476

>ref|NP_568400.1| auxin response transcription factor (ARF7); protein id: At5g20730.1,
            supported by cDNA: gi_4103242 [Arabidopsis thaliana]
            gi|8071650|gb|AAF71831.1|AF186466_1 non-phototropic
            hypocotyl 4 [Arabidopsis thaliana]
          Length = 1165

 Score = 80.1 bits (196), Expect = 3e-14
 Identities = 37/48 (77%), Positives = 39/48 (81%)
 Frame = -3

Query: 710  LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
            LS  EVQQMSLDG+   VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 1118 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1165

>gb|AAD04807.1| BIPOSTO [Arabidopsis thaliana]
          Length = 1165

 Score = 80.1 bits (196), Expect = 3e-14
 Identities = 37/48 (77%), Positives = 39/48 (81%)
 Frame = -3

Query: 710  LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
            LS  EVQQMSLDG+   VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 1118 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1165

>gb|AAL85006.1| unknown protein [Arabidopsis thaliana]
          Length = 1045

 Score = 80.1 bits (196), Expect = 3e-14
 Identities = 37/48 (77%), Positives = 39/48 (81%)
 Frame = -3

Query: 710  LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
            LS  EVQQMSLDG+   VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 998  LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1045

>gb|AAD02218.1| auxin response factor 7 [Arabidopsis thaliana]
          Length = 1164

 Score = 80.1 bits (196), Expect = 3e-14
 Identities = 37/48 (77%), Positives = 39/48 (81%)
 Frame = -3

Query: 710  LSYTEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGPYDDNSAASFNR 567
            LS  EVQQMSLDG+   VP+ NQACSG DSGNAWRG YDDNSA SFNR
Sbjct: 1117 LSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGHYDDNSATSFNR 1164

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,775,188
Number of Sequences: 1393205
Number of extensions: 12920206
Number of successful extensions: 30552
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 29908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30547
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GNLf005b12 BP075065 1 512 2 GNLf001d04 BP074846 22 516 3 MFL005a05_f BP033612 32 404 4 MPDL063h04_f AV779726 34 510 5 GNLf015c08 BP075674 35 509 6 MRL005g12_f BP083978 37 414 7 GNLf012e11 BP075526 155 475 8 SPDL034h03_f BP054156 176 684 9 GENLf026d12 BP063706 181 647 10 GENLf052e11 BP065139 181 644 11 GENLf055g04 BP065300 182 677 12 GENLf013c07 BP063018 182 675 13 MF077h01_f BP032396 196 666 14 GENLf048c01 BP064887 198 703 15 MWL051g03_f AV769458 237 744

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