Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000341A_C01 KMC000341A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD12767.2| LHY protein [Phaseolus vulgaris] 150 2e-35
gb|AAF26474.1|AC007323_15 T25K16.6 [Arabidopsis thaliana] 114 1e-24
emb|CAA07004.1| late elongated hypocotyl [Arabidopsis thaliana] 114 1e-24
ref|NP_171614.1| DNA-binding protein, putative; protein id: At1g... 114 1e-24
ref|NP_566087.2| MYB-related transcription factor (CCA1); protei... 82 7e-15
>emb|CAD12767.2| LHY protein [Phaseolus vulgaris]
Length = 723
Score = 150 bits (379), Expect = 2e-35
Identities = 83/138 (60%), Positives = 99/138 (71%)
Frame = -3
Query: 708 SWKEFLEEGRVXFRALFSRQVLPQSFSPPQNLKNKDHQLDNIMDDKLNTDDKDKDDVDRQ 529
SWKE EGR+ F+ALFSR+VLPQSFSPP LKNKD Q+D D K N D++ +D+D +
Sbjct: 594 SWKEVSSEGRLAFQALFSREVLPQSFSPPHALKNKD-QMDITNDYKQNIADRN-EDLDSK 651
Query: 528 KCSSSYEGMQKNLPFFEINEEGQVTIGLEQGKLNTRRTGFKPYKRCSMEAKENRVGTTSN 349
KCSS+ +P F N G +TIGL QGKL TRRTGFKPYKRCS+EA+ENRVG
Sbjct: 652 KCSSN---ALHKIPSFVENNVGLLTIGLGQGKLKTRRTGFKPYKRCSVEARENRVGANC- 707
Query: 348 QGDEKGCKRIRLEREAST 295
+EKGCKRIRLE + ST
Sbjct: 708 --EEKGCKRIRLEGDTST 723
>gb|AAF26474.1|AC007323_15 T25K16.6 [Arabidopsis thaliana]
Length = 656
Score = 114 bits (286), Expect = 1e-24
Identities = 69/140 (49%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Frame = -3
Query: 708 SWKEFLEEGRVXFRALFSRQVLPQSFSPPQNLKNKDH-QLDNIMDDKLNTDDKDKDDVDR 532
SWKE EEGR+ F+ALF+R+ LPQSFSPPQ +N + Q D M N +D D
Sbjct: 538 SWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAAD- 596
Query: 531 QKCSSSYEGMQKNLPFFEINEEGQVTIGLEQGK-LNTRRTGFKPYKRCSMEAKENRVGTT 355
+EG V IG+ K L TR+TGFKPYKRCSME KE++VG
Sbjct: 597 --------------------QEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNI 636
Query: 354 SNQGDEKGCKRIRLEREAST 295
+NQ DEK CKR+RLE EAST
Sbjct: 637 NNQSDEKVCKRLRLEGEAST 656
>emb|CAA07004.1| late elongated hypocotyl [Arabidopsis thaliana]
Length = 645
Score = 114 bits (286), Expect = 1e-24
Identities = 69/140 (49%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Frame = -3
Query: 708 SWKEFLEEGRVXFRALFSRQVLPQSFSPPQNLKNKDH-QLDNIMDDKLNTDDKDKDDVDR 532
SWKE EEGR+ F+ALF+R+ LPQSFSPPQ +N + Q D M N +D D
Sbjct: 527 SWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAAD- 585
Query: 531 QKCSSSYEGMQKNLPFFEINEEGQVTIGLEQGK-LNTRRTGFKPYKRCSMEAKENRVGTT 355
+EG V IG+ K L TR+TGFKPYKRCSME KE++VG
Sbjct: 586 --------------------QEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNI 625
Query: 354 SNQGDEKGCKRIRLEREAST 295
+NQ DEK CKR+RLE EAST
Sbjct: 626 NNQSDEKVCKRLRLEGEAST 645
>ref|NP_171614.1| DNA-binding protein, putative; protein id: At1g01060.1 [Arabidopsis
thaliana]
Length = 645
Score = 114 bits (286), Expect = 1e-24
Identities = 69/140 (49%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Frame = -3
Query: 708 SWKEFLEEGRVXFRALFSRQVLPQSFSPPQNLKNKDH-QLDNIMDDKLNTDDKDKDDVDR 532
SWKE EEGR+ F+ALF+R+ LPQSFSPPQ +N + Q D M N +D D
Sbjct: 527 SWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAAD- 585
Query: 531 QKCSSSYEGMQKNLPFFEINEEGQVTIGLEQGK-LNTRRTGFKPYKRCSMEAKENRVGTT 355
+EG V IG+ K L TR+TGFKPYKRCSME KE++VG
Sbjct: 586 --------------------QEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNI 625
Query: 354 SNQGDEKGCKRIRLEREAST 295
+NQ DEK CKR+RLE EAST
Sbjct: 626 NNQSDEKVCKRLRLEGEAST 645
>ref|NP_566087.2| MYB-related transcription factor (CCA1); protein id: At2g46830.2,
supported by cDNA: gi_15293054 [Arabidopsis thaliana]
gi|20197321|gb|AAM15022.1| MYB-related transcription
factor (CCA1); identical to GB:U28422 supported by
cDNA: gi_15293054_gb_AY050961 1_ [Arabidopsis thaliana]
gi|24429606|gb|AAN61004.1| putative MYB-related
transcription factor CCA1 [Arabidopsis thaliana]
gi|24762205|gb|AAN64169.1| putative MYB-related
transcription factor CCA1 [Arabidopsis thaliana]
Length = 526
Score = 82.0 bits (201), Expect = 7e-15
Identities = 54/145 (37%), Positives = 77/145 (52%), Gaps = 8/145 (5%)
Frame = -3
Query: 705 WKEFLEEGRVXFRALFSRQVLPQSFSPPQNLKNKDHQLDN-----IMDDKLNTDDKDKDD 541
WK +EGR+ F+ALFSR+VLPQSF+ + + ++ Q +D DD
Sbjct: 400 WKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQEQRYPMALDLNFTAQLTPVDD 459
Query: 540 VDRQKCSSSYEGMQKNLPFFEINEEGQVTIGLEQGKLNTR-RTGFKPYKRCSMEAKENRV 364
+ ++ G + IGL+ KL +R RTGFKPYKRCSMEAKE+R+
Sbjct: 460 QEEKR------------------NTGFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRI 501
Query: 363 GTTSN--QGDEKGCKRIRLEREAST 295
+ ++K KR+RLE +AST
Sbjct: 502 LNNNPIIHVEQKDPKRMRLETQAST 526
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,760,908
Number of Sequences: 1393205
Number of extensions: 12578639
Number of successful extensions: 43455
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 40838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43233
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
