>KMC000340A_C04 KMC000340A_c04
gttttttttttttttAGCATTCCTAAGGTAAAATTAACTAAAATAAAATCTTTAACATAT
ACTTCCTACAACCGGTATATAGGAATGTATGTCCAAGACTCCAAGTCAAAATCATGACTG
AGTTACAATTTAAATCACCAATACCAAATAGCACCTGAATGAAAGTTGTTCTCAATTTTA
TGATTTTTTAAAAAATCAACACAATCATGATAATATCCTAATAGATGATATTACCACTAA
GCGATGGCCTGCAAAGTCCATACCAAACCAACTTTAGGCAAGTACCTCTAGAGTTCTCCA
AAACTGACTAAATACAAAGATTTCAGATGCCAAAGCAAACAACTCGAGACATGGACCTGC
AATAAGTAAATACCACAACGGTTTCATAGGAAGCTGCCAAATTCCAAAATCTTCTTACAT
TAGTTGAATCTTCACTCAGGAGTGTTTGGTTATTTTTCATCACACTCCCATCCTCCTTCT
TTTCAAGTCCAACTTGGCACAAGTACAACAACCAAGCTAGTAAGCTACTACTCTAGCCTC
TGGGACCACAAGTCTATTAATTTTCA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000340A_C04 KMC000340A_c04
         (566 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_507743.1| F-box domain containing protein family member [...    32  5.5

>ref|NP_507743.1| F-box domain containing protein family member [Caenorhabditis
           elegans] gi|7499573|pir||T21203 hypothetical protein
           F21D9.6 - Caenorhabditis elegans
           gi|3876161|emb|CAB04159.1| Hypothetical protein F21D9.6
           [Caenorhabditis elegans]
          Length = 298

 Score = 32.0 bits (71), Expect = 5.5
 Identities = 21/62 (33%), Positives = 32/62 (50%), Gaps = 3/62 (4%)
 Frame = -2

Query: 262 YGLCRPSLSGNIIY*DIIMIVLIF*KIIKLRTTFI---QVLFGIGDLNCNSVMILTWSLG 92
           Y  C   LSGN+   DI   +    ++++L + FI   Q +FG G+LN   + +  W LG
Sbjct: 153 YHYCHMMLSGNVFQHDIECPMFRINELLQLNSEFIELNQTIFGSGNLN---LFLKHWLLG 209

Query: 91  HT 86
            T
Sbjct: 210 LT 211

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,894,362
Number of Sequences: 1393205
Number of extensions: 9355784
Number of successful extensions: 22024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22021
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MRL048b09_f BP086014 1 397 2 MRL028f04_f BP085140 37 495 3 SPDL002h07_f BP052142 48 570 4 MPDL057a06_f AV779369 54 567

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